Factsheet for GSMUA_Achr4P19590_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62190.1	GSMUA_Achr10P...	AT1G53720.1	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P05930_001	Banana	nucleus	74.58	88.47
HORVU5Hr1G080170.2	Barley	nucleus	61.94	68.83
Os09t0520700-01	Rice	nucleus, plastid	65.28	67.53
Zm00001d006160_P001	Maize	nucleus	65.69	67.19
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	23.19	66.8
EER97062	Sorghum	nucleus	65.83	66.67
Zm00001d021196_P004	Maize	nucleus	65.14	66.34
TraesCS5D01G315900.1	Wheat	mitochondrion, nucleus	63.61	65.43
TraesCS5B01G309500.1	Wheat	nucleus	63.61	65.43
TraesCS5A01G308900.1	Wheat	nucleus	63.33	65.24
VIT_16s0022g02110.t01	Wine grape	plastid	62.36	64.7
KRG91400	Soybean	nucleus	61.25	63.64
Solyc03g007010.2.1	Tomato	nucleus	60.28	63.64
PGSC0003DMT400079640	Potato	nucleus	59.31	63.35
KRH35418	Soybean	endoplasmic reticulum	61.11	63.13
PGSC0003DMT400071859	Potato	cytosol, nucleus, plastid	58.33	62.78
Solyc06g035450.2.1	Tomato	nucleus	34.72	62.34
CDX87236	Canola	nucleus	55.0	62.17
CDY16789	Canola	nucleus	54.44	61.73
AT5G62190.1	Thale cress	nucleus	57.36	61.55
Bra035903.1-P	Field mustard	nucleus	53.75	61.14
Bra029275.1-P	Field mustard	nucleus	55.83	61.0
CDY28363	Canola	plastid	22.36	58.76
Zm00001d035226_P001	Maize	plasma membrane	20.69	42.82
Zm00001d049075_P001	Maize	extracellular, golgi	26.81	39.88
Zm00001d035797_P001	Maize	mitochondrion	31.53	39.82
Zm00001d046048_P001	Maize	cytosol	9.86	37.77
Zm00001d049254_P001	Maize	cytosol	10.0	37.7
Zm00001d050438_P002	Maize	extracellular	16.81	37.58
GSMUA_Achr2P01980_001	Banana	nucleus	33.89	35.06
Zm00001d024138_P001	Maize	plastid	13.61	34.75
GSMUA_Achr11P...	Banana	plastid	33.75	31.4
CDY34116	Canola	cytosol	21.25	30.0
GSMUA_Achr7P00980_001	Banana	mitochondrion	20.97	29.15
GSMUA_Achr2P13080_001	Banana	plastid	26.94	26.29
GSMUA_Achr10P...	Banana	cytosol	16.94	23.83
CDY44622	Canola	cytosol	22.22	18.52
GSMUA_Achr2P13070_001	Banana	cytosol	27.64	16.84

Protein Annotations

Gene3D:3.30.70.2280	Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016787
EnsemblPlantsGene:GSMUA_Achr4G19590_001	EnsemblPlants:GSMUA_Achr4P19590_001	EnsemblPlants:GSMUA_Achr4T19590_001	InterPro:GUCT	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M0SQC2	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF08152	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF237	InterPro:RBD_domain_sf	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	SUPFAM:SSF54928	UniParc:UPI000296D2A2	SEG:seg	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G19590_001]

Coordinates

chr4:+:20505999..20511100

Molecular Weight (calculated)

77876.9 Da

IEP (calculated)

9.829

GRAVY (calculated)

-0.425

Length

720 amino acids

Sequence
(BLAST)

001: MPSLVLSDPL ISSEETKKSK PKKPQYGSPE EEKKNKKKKK QHVENELSDL ELDNGTGETT ASEKKKVKKE KKRKVPDDED KSDTTSDSTE VGEKKTATAN
101: GAPAKKPKLM KDEGETDSGA ADDPNALSNF RISKVLRETL NSKGIKALFP IQAMTFDLIL DGFDLVGRAR TGQGKTLAFV LPILESLTNG VHKASRKTGY
201: GRSPTVLVLL PTRELANQVH SDFEVYGGAV GLSSCCLYGG SPYRAQEISL KRGVDIVVGT PGRIKDHIER GTLDLKTLKF RVLDEADEML NMGFVDDVEL
301: ILGKVEDVSK VQTLLFSATL PDWVKKISTR FLKKDKKTAD LVGNEKLKAS ASVRHLVLPC TRSARPQIIP DVIRCYSHGG RTIVFTETKE SASELAGLLP
401: GARALHGDVM QAQREVILSG FRSGRFLVLV ATNVAARGLD INDVQLIIQC EPPRDVEAYI HRSGRTGRAG NTGVAILLYE PKHSFSLSRI ERESGVKFEH
501: ISAPQPTDIA ESAGSEALLL STQGVYSLKC SVIPVFRSQA EHLLSSSGLS AVDILAKALA KAAGFTDIKK RSLLSSMENY VTLLLQTGRP IYSPSFAFST
601: FRRFLPDDKI EGVKGLSLTA DGTGAVFDVP ADDVDAFLEG QENAHSVNIE VLEKLPPLQD RDQSRGGNSG RGRFGGGGGR FSGGRGGGGN GSYRRTGGFS
701: NGGGRGRGYG GANRFNNRRK

Best Arabidopsis Sequence Match ( AT5G62190.1 )
(BLAST)

001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y

Arabidopsis Description

RH7DEAD-box ATP-dependent RNA helicase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39189]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.