Factsheet for GSMUA_Achr11P14130_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P01980_001	Banana	nucleus	76.23	84.77
VIT_14s0060g00060.t01	Wine grape	plastid	75.19	76.18
Os03t0827700-01	Rice	nucleus	68.22	73.03
CDX87045	Canola	plastid	69.25	71.85
CDY05524	Canola	plastid	68.48	71.82
Bra020533.1-P	Field mustard	plastid	68.48	71.72
CDY66725	Canola	plastid	68.35	71.2
CDX80564	Canola	plastid	66.93	71.15
Bra036582.1-P	Field mustard	plastid	68.22	71.06
AT5G26742.2	Thale cress	plastid	67.96	70.32
Bra009900.1-P	Field mustard	plastid	67.83	70.19
Solyc08g042050.2.1	Tomato	plastid	67.57	70.11
Zm00001d012922_P003	Maize	plastid	67.44	70.07
CDY61108	Canola	plastid	67.83	70.0
CDY19766	Canola	plastid	68.73	69.91
KXG37219	Sorghum	plastid	68.86	69.4
Zm00001d034721_P002	Maize	plastid	67.96	69.39
KRG96641	Soybean	nucleus	69.12	69.39
KRH68372	Soybean	nucleus	68.73	69.0
TraesCS4A01G367700.1	Wheat	nucleus	67.31	68.1
TraesCS5D01G505700.2	Wheat	plastid	67.05	67.32
KRH33703	Soybean	plastid	63.95	67.26
KRG90413	Soybean	plastid	63.7	66.98
TraesCS5B01G504900.1	Wheat	plastid	65.63	63.18
GSMUA_Achr7P00980_001	Banana	mitochondrion	28.29	42.28
GSMUA_Achr7P05930_001	Banana	nucleus	30.49	38.88
GSMUA_Achr2P13080_001	Banana	plastid	35.92	37.67
GSMUA_Achr4P19590_001	Banana	nucleus	31.4	33.75
GSMUA_Achr10P...	Banana	cytosol	17.05	25.78
GSMUA_Achr2P13070_001	Banana	cytosol	36.82	24.11

Protein Annotations

MapMan:16.12.2.1.1.5	Gene3D:3.30.70.1800	Gene3D:3.40.50.300	Gene3D:4.10.60.10	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270
GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr11G14130_001	EnsemblPlants:GSMUA_Achr11P14130_001	EnsemblPlants:GSMUA_Achr11T14130_001	InterPro:GUCT	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR001878	InterPro:IPR014001	InterPro:IPR014014	UniProt:M0RS43
InterPro:P-loop_NTPase	PFAM:PF00098	PFAM:PF00270	PFAM:PF00271	PFAM:PF08152	ScanProsite:PS00039
PFscan:PS50158	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF326
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00343	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
SUPFAM:SSF57756	UniParc:UPI00029582C7	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_60.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr11G14130_001]

Coordinates

chr11:-:15196230..15203430

Molecular Weight (calculated)

84118.1 Da

IEP (calculated)

6.475

GRAVY (calculated)

-0.374

Length

774 amino acids

Sequence
(BLAST)

001: MAATSTTTAT IGVSSLYRTP SLDLSARRVF PCLSDKPHSC SGLLKVSAAD ATKRFGSLCL GADRRGSRAR CPMFVTSAVA SPNSVLSEEA FQGFRGLSKS
101: SLEEGEEEGY DADTYESEEE EEGPFSATAG HDENEVAIAS LDLPQQLVSS LEKRGITHLF PIQRAVLLPA LEGRDLIARA KTGTGKTLAF GIPIIKRLSE
201: ADLGRKTQSG HLPRVLVLAP TRELAKQVEK EIDESAPYLS TVCVYGGVSY NVQKSALSRG VDVVVGTPGR IIDLINDNSL RLGEVEYLVL DEADRMLAVG
301: FEEDVELILE KLPSKRQSML FSATMPDWVK KLARRHLNDP LIVDLVGDQD EKLAEGIKLY AVPTTSTSKR TILSDLITVY AKGGKTIVFT QTKRDADEVS
401: MALTNSIASE ALHGDISQHQ RERTLNGFRQ GKFTVLVATD VAARGLDIPN VDLIIHYELP NDPETFVHRS GRTGRAGKEG TAILMFTSSQ RRTVKSLERD
501: VGCRFEFTSP PAMQEVLESS AEQVVATLQG VHSESIQYFL PAAQRLIDEL GTQALAAALA HLSGFSQPPS SHSLISHEQG WVTLQLTRES GHSRGFFSAR
601: SVTGFLSDVF PAAADEVGKI YMIADERVQG AVFDLPDDIA KELLNKQLPP GNSISKITKL PTLQDDGPPV DNYGRFSNRD WGSRGGGSGE RSQRVSRNWG
701: GRNSDSGDGF RRGGQVYRTD NSWSKSPRGS EDDWLIGGRR SHHSSSQGSR ERGFGGACFN CGRSGHRASE CPNK

Best Arabidopsis Sequence Match ( AT5G26742.2 )
(BLAST)

001: MASTVGVPSL YQVPHLEISK PNSKKRSNCL SLSLDKPFFT PLSLVRRTRR IHSSSLLVPS AVATPNSVLS EEAFKSLGLS DHDEYDLDGD NNNVEADDGE
101: ELAISKLSLP QRLEESLEKR GITHLFPIQR AVLVPALQGR DIIARAKTGT GKTLAFGIPI IKRLTEEAGD YTAFRRSGRL PKFLVLAPTR ELAKQVEKEI
201: KESAPYLSTV CVYGGVSYTI QQSALTRGVD VVVGTPGRII DLIEGRSLKL GEVEYLVLDE ADQMLAVGFE EAVESILENL PTKRQSMLFS ATMPTWVKKL
301: ARKYLDNPLN IDLVGDQDEK LAEGIKLYAI ATTSTSKRTI LSDLITVYAK GGKTIVFTQT KRDADEVSLA LSNSIATEAL HGDISQHQRE RTLNAFRQGK
401: FTVLVATDVA SRGLDIPNVD LVIHYELPND PETFVHRSGR TGRAGKEGSA ILMHTSSQKR TVRSLERDVG CHFEFISPPT VGDLLESSAD QVVATLNGVH
501: PDSIKFFSAT AQKLYEEKGT DALAAALAHL SGFSQPPSSR SLLSHEKGWV TLQLIRDPTN ARGFLSARSV TGFLSDLYRT AADEVGKIFL IADDRIQGAV
601: FDLPEEIAKE LLEKDVPEGN SLSMITKLPP LQDDGPSSDN YGRFSSRDRM PRGGGGSRGS RGGRGGSSRG RDSWGGDDDR GSRRSSGGGS SWSRGGSSSR
701: GSSDDWLIGG RSSSSSRAPS RERSFGGSCF ICGKSGHRAT DCPDKRGF

Arabidopsis Description

RH3RH3 [Source:UniProtKB/TrEMBL;Acc:A0A178UT03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.