Factsheet for Bra009900.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61108	Canola	plastid	99.87	99.6
CDX80564	Canola	plastid	96.93	99.59
Bra036582.1-P	Field mustard	plastid	93.45	94.08
Bra020533.1-P	Field mustard	plastid	92.38	93.5
AT5G26742.2	Thale cress	plastid	90.91	90.91
VIT_14s0060g00060.t01	Wine grape	plastid	73.66	72.12
GSMUA_Achr2P01980_001	Banana	nucleus	66.58	71.55
KRG96641	Soybean	nucleus	72.06	69.91
Solyc08g042050.2.1	Tomato	plastid	69.52	69.71
KRG90413	Soybean	plastid	68.18	69.29
Os03t0827700-01	Rice	nucleus	66.84	69.16
KRH68372	Soybean	nucleus	71.26	69.13
KRH33703	Soybean	plastid	67.91	69.02
Zm00001d012922_P003	Maize	plastid	67.91	68.19
GSMUA_Achr11P...	Banana	plastid	70.19	67.83
Zm00001d034721_P002	Maize	plastid	67.51	66.62
KXG37219	Sorghum	plastid	68.05	66.28
TraesCS4A01G367700.1	Wheat	nucleus	67.65	66.14
TraesCS5D01G505700.2	Wheat	plastid	67.78	65.76
TraesCS5B01G504900.1	Wheat	plastid	66.44	61.82
Bra023836.1-P	Field mustard	mitochondrion	36.76	44.57
Bra031349.1-P	Field mustard	mitochondrion	35.56	44.19
Bra035903.1-P	Field mustard	nucleus	30.08	35.55
Bra029275.1-P	Field mustard	nucleus	30.21	34.29
Bra033519.1-P	Field mustard	cytosol	18.45	25.99

Protein Annotations

MapMan:16.12.2.1.1.5	Gene3D:3.30.70.1800	Gene3D:3.40.50.300	Gene3D:4.10.60.10	EnsemblPlantsGene:Bra009900	EnsemblPlants:Bra009900.1
EnsemblPlants:Bra009900.1-P	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	GO:GO:0016787	InterPro:GUCT	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR001878	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4D0A2
InterPro:P-loop_NTPase	PFAM:PF00098	PFAM:PF00270	PFAM:PF00271	PFAM:PF08152	PFscan:PS50158
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00343	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	SUPFAM:SSF57756	UniParc:UPI000253F41E
InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:	:

Description

AT5G26742 (E=0.0) emb1138 | emb1138 (embryo defective 1138); ATP binding / ATP-dependent helicase/ RNA binding / helicase/ nucleic acid binding / zinc ion binding

Coordinates

chrA06:-:17970371..17973474

Molecular Weight (calculated)

80784.6 Da

IEP (calculated)

8.718

GRAVY (calculated)

-0.352

Length

748 amino acids

Sequence
(BLAST)

001: MASTVGVPSL YQVPHLEFSK TTSKKRSTCL PLSLNKPFLS PFSLRRPRLI HSSSSLLIPS AVATPNSVLS EEAFKSLGLS DEFDNTDPSP SDDDGEELAI
101: SKLGLPQRLG ESLEKRGITH LFPIQRAVLV PALQGRDIIA RAKTGTGKTL AFGIPIIKRL TEQAGDYSAF RRPGRLAKFL VLAPTRELAK QVEKEIKESA
201: PYLSTVCVYG GVSYTIQQNA LTRGVDVVVG TPGRIIDLIE GRSLKLGEVE YLVLDEADQM LAVGFEEAVE SILENLPQKR QSMLFSATMP TWVKKLARKY
301: LDNPLNIDLV GDQDEKLAEG IKLYAISATS TSKRTILSDL ITVYAKGGKT IVFTQTKRDA DEVSLALSSS IASEALHGDI SQHQRERTLN GFRQGKFTVL
401: VATDVASRGL DIPNVDLVIH YELPNDPETF VHRSGRTGRA GKEGSAILMH SSSQKRTVRS LERDVGCRFE FISPPTVGDL LEASADHVVA TLNGVHPESI
501: KFFSATAQKL FEEKGTDALA AALAHLSGFS QPPSSRSLLS HEQGWVTLQL IRDPTNARGF LSARSVTGFL SDVYRPAADR VGKIFMIADD RVQGAVFDLP
601: EDIAKELLEN EVPEGNSLSL ITKLPPLQDD GPSSDNYGRF SSRDRMPRGG GGSRGSRFGG RGGSSSRGRD SWGGDDDRRG RSSGGGGSSW SRGGGSRGSS
701: DDWLIGGGSD RRSSSSRAPS RERSFGGACF NCGSSGHRAA DCPDKRGF

Best Arabidopsis Sequence Match ( AT5G26742.1 )
(BLAST)

001: MASTVGVPSL YQVPHLEISK PNSKKRSNCL SLSLDKPFFT PLSLVRRTRR IHSSSLLVPS AVATPNSVLS EEAFKSLGLS DHDEYDLDGD NNNVEADDGE
101: ELAISKLSLP QRLEESLEKR GITHLFPIQR AVLVPALQGR DIIARAKTGT GKTLAFGIPI IKRLTEEAGD YTAFRRSGRL PKFLVLAPTR ELAKQVEKEI
201: KESAPYLSTV CVYGGVSYTI QQSALTRGVD VVVGTPGRII DLIEGRSLKL GEVEYLVLDE ADQMLAVGFE EAVESILENL PTKRQSMLFS ATMPTWVKKL
301: ARKYLDNPLN IDLVGDQDEK LAEGIKLYAI ATTSTSKRTI LSDLITVYAK GGKTIVFTQT KRDADEVSLA LSNSIATEAL HGDISQHQRE RTLNAFRQGK
401: FTVLVATDVA SRGLDIPNVD LVIHYELPND PETFVHRSGR TGRAGKEGSA ILMHTSSQKR TVRSLERDVG CHFEFISPPT VGDLLESSAD QVVATLNGVH
501: PDSIKFFSAT AQKLYEEKGT DALAAALAHL SGFSQPPSSR SLLSHEKGWV TLQLIRDPTN ARGFLSARSV TGFLSDLYRT AADEVGKIFL IADDRIQGAV
601: FDLPEEIAKE LLEKDVPEGN SLSMITKLPP LQDDGPSSDN YGRFSSRDRM PRGGGGSRGS RGGRGGSSRG RDSWGGDDDR GSRRSSGGGS SWSRGGSSSR
701: GSSDDWLIGG RSSSSSRAPS RESFGGSCFI CGKSGHRATD CPDKRGF

Arabidopsis Description

RH3RH3 [Source:UniProtKB/TrEMBL;Acc:A0A178UT03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.