Factsheet for VIT_14s0060g00060.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P01980_001	Banana	nucleus	71.73	78.74
Solyc08g042050.2.1	Tomato	plastid	73.95	75.74
CDX87045	Canola	plastid	73.69	75.47
GSMUA_Achr11P...	Banana	plastid	76.18	75.19
CDY66725	Canola	plastid	72.91	74.97
CDX80564	Canola	plastid	71.34	74.86
KRG96641	Soybean	nucleus	75.52	74.84
AT5G26742.2	Thale cress	plastid	73.17	74.73
KRH68372	Soybean	nucleus	75.39	74.71
Os03t0827700-01	Rice	nucleus	70.55	74.55
Bra020533.1-P	Field mustard	plastid	71.99	74.42
CDY05524	Canola	plastid	71.86	74.39
Bra036582.1-P	Field mustard	plastid	72.25	74.29
Bra009900.1-P	Field mustard	plastid	72.12	73.66
CDY61108	Canola	plastid	71.99	73.33
CDY19766	Canola	plastid	73.04	73.32
KRH33703	Soybean	plastid	70.03	72.69
KRG90413	Soybean	plastid	69.37	72.01
Zm00001d012922_P003	Maize	plastid	70.16	71.95
Zm00001d034721_P002	Maize	plastid	70.94	71.5
KXG37219	Sorghum	plastid	71.07	70.7
TraesCS4A01G367700.1	Wheat	nucleus	69.9	69.8
TraesCS5D01G505700.2	Wheat	plastid	70.03	69.39
TraesCS5B01G504900.1	Wheat	plastid	68.06	64.68
VIT_08s0007g03740.t01	Wine grape	extracellular	4.71	47.37
VIT_12s0142g00670.t01	Wine grape	plastid	38.61	44.29
VIT_16s0022g02110.t01	Wine grape	plastid	30.5	33.57
VIT_10s0003g04000.t01	Wine grape	nucleus	17.41	25.78

Protein Annotations

EntrezGene:100251060	wikigene:100251060	MapMan:16.12.2.1.1.5	Gene3D:3.30.70.1800	Gene3D:3.40.50.300	Gene3D:4.10.60.10
EMBL:AM482103	ProteinID:CAN77581	ProteinID:CAN77581.1	ProteinID:CBI39694	ProteinID:CBI39694.3	UniProt:D7UAC9
InterPro:DEAD/DEAH_box_helicase_dom	EMBL:FN596746	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787
InterPro:GUCT	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR001878	InterPro:IPR014001
InterPro:IPR014014	EntrezGene:LOC100251060	wikigene:LOC100251060	InterPro:P-loop_NTPase	PFAM:PF00098	PFAM:PF00270
PFAM:PF00271	PFAM:PF08152	PFscan:PS50158	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00343	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	SUPFAM:SSF57756	TIGR:TC54184	TIGR:TC54296	TIGR:TC69635	UniParc:UPI0001984A30
ArrayExpress:VIT_14s0060g00060	EnsemblPlantsGene:VIT_14s0060g00060	EnsemblPlants:VIT_14s0060g00060.t01	unigene:Vvi.7087	RefSeq:XP_002278318	RefSeq:XP_002278318.1
InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr14:-:29588..37587

Molecular Weight (calculated)

83488.7 Da

IEP (calculated)

7.377

GRAVY (calculated)

-0.387

Length

764 amino acids

Sequence
(BLAST)

001: MASSIIGVSS VYQTTALELS RRTSAHSLSL PFSDKTHLGV FKAPNTRVLS DASLRRSFKQ GISFVPSAIA TPNSVLSEEA FKGLGGFSKD PLDVTDTDDD
101: YDPEIEASAA AQEDELALAQ LGLPPRLVES LEQRGITHLF PIQRAVLVPA LEGRDLIARA KTGTGKTLAF GIPIIKRLSE DDEKRTSQRR SGRLPRVLVL
201: APTRELAKQV EKEIKESAPY LSTVCVYGGV SYITQQNALS RGVDVVVGTP GRIIDLIKGN SLKLGEVQNL VLDEADQMLA VGFEEDVEVI LEKLPSERQS
301: MLFSATMPAW VKKLARKYLD NPLTIDLVGD HDEKLAEGIK LYAIPTTATS KRTILSDLIT VYAKGGKTIV FTQTKRDADE VSMALTNSIA SEALHGDISQ
401: HQRERTLNGF RQGKFTVLVA TDVAARGLDI PNVDLIIHYE LPNDPETFVH RSGRTGRAGK EGTAILMFTS SQRRTVKSLE RDVGCKFEFI SPPAIEEVLE
501: SSAEQVVATL NGVHPESVEF FTPTAQKLIE EKGTGALAAA LAHLSGFSQP PSFRSLISHE QGWVTLQLTR DSGYSRGFLS ARSVTGFLSD VYPTAADELG
601: KIYLVADERV QGAVFDLPEE IAKELLNKQM PPGNTISKIT KLPALQDDGP AGDYYGRFSN RDRSSRGGSR ERRGSRISRG RGSSWGSDDD GGDDLNRRGG
701: RSFRSNNNWS RNLRTSEDDW LIGGRRSNRS SSSFGSRERS FGGSCFTCGR SGHRASECPN KRDY

Best Arabidopsis Sequence Match ( AT5G26742.2 )
(BLAST)

001: MASTVGVPSL YQVPHLEISK PNSKKRSNCL SLSLDKPFFT PLSLVRRTRR IHSSSLLVPS AVATPNSVLS EEAFKSLGLS DHDEYDLDGD NNNVEADDGE
101: ELAISKLSLP QRLEESLEKR GITHLFPIQR AVLVPALQGR DIIARAKTGT GKTLAFGIPI IKRLTEEAGD YTAFRRSGRL PKFLVLAPTR ELAKQVEKEI
201: KESAPYLSTV CVYGGVSYTI QQSALTRGVD VVVGTPGRII DLIEGRSLKL GEVEYLVLDE ADQMLAVGFE EAVESILENL PTKRQSMLFS ATMPTWVKKL
301: ARKYLDNPLN IDLVGDQDEK LAEGIKLYAI ATTSTSKRTI LSDLITVYAK GGKTIVFTQT KRDADEVSLA LSNSIATEAL HGDISQHQRE RTLNAFRQGK
401: FTVLVATDVA SRGLDIPNVD LVIHYELPND PETFVHRSGR TGRAGKEGSA ILMHTSSQKR TVRSLERDVG CHFEFISPPT VGDLLESSAD QVVATLNGVH
501: PDSIKFFSAT AQKLYEEKGT DALAAALAHL SGFSQPPSSR SLLSHEKGWV TLQLIRDPTN ARGFLSARSV TGFLSDLYRT AADEVGKIFL IADDRIQGAV
601: FDLPEEIAKE LLEKDVPEGN SLSMITKLPP LQDDGPSSDN YGRFSSRDRM PRGGGGSRGS RGGRGGSSRG RDSWGGDDDR GSRRSSGGGS SWSRGGSSSR
701: GSSDDWLIGG RSSSSSRAPS RERSFGGSCF ICGKSGHRAT DCPDKRGF

Arabidopsis Description

RH3RH3 [Source:UniProtKB/TrEMBL;Acc:A0A178UT03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.