Factsheet for TraesCS4A01G367700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 7
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G505700.2	Wheat	plastid	99.48	98.7
TraesCS5B01G504900.1	Wheat	plastid	97.12	92.41
Os03t0827700-01	Rice	nucleus	79.87	84.51
Zm00001d012922_P003	Maize	plastid	81.83	84.03
Zm00001d034721_P002	Maize	plastid	82.09	82.85
KXG37219	Sorghum	plastid	82.22	81.9
GSMUA_Achr2P01980_001	Banana	nucleus	66.67	73.28
VIT_14s0060g00060.t01	Wine grape	plastid	69.8	69.9
CDX80564	Canola	plastid	65.49	68.82
CDY05524	Canola	plastid	65.75	68.16
CDX87045	Canola	plastid	66.41	68.1
Bra020533.1-P	Field mustard	plastid	65.75	68.06
CDY66725	Canola	plastid	66.01	67.97
Bra009900.1-P	Field mustard	plastid	66.14	67.65
Bra036582.1-P	Field mustard	plastid	65.62	67.56
CDY61108	Canola	plastid	66.14	67.47
GSMUA_Achr11P...	Banana	plastid	68.1	67.31
AT5G26742.2	Thale cress	plastid	65.75	67.25
Solyc08g042050.2.1	Tomato	plastid	65.49	67.16
CDY19766	Canola	plastid	66.01	66.36
KRH68372	Soybean	nucleus	66.14	65.63
KRG96641	Soybean	nucleus	65.62	65.11
KRG90413	Soybean	plastid	62.48	64.95
KRH33703	Soybean	plastid	61.83	64.27
TraesCS2A01G253700.1	Wheat	mitochondrion	36.6	45.23
TraesCS5A01G047300.2	Wheat	mitochondrion	34.51	42.86
TraesCS5A01G308900.1	Wheat	nucleus	31.5	34.48
TraesCS3A01G243600.1	Wheat	cytosol	7.84	27.52
TraesCS6A01G358500.1	Wheat	nucleus	16.21	23.57

Protein Annotations

MapMan:16.12.2.1.1.5	Gene3D:3.30.70.1800	Gene3D:3.40.50.300	Gene3D:4.10.60.10	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270
GO:GO:0016787	InterPro:GUCT	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR001878
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00098	PFAM:PF00270	PFAM:PF00271
PFAM:PF08152	PFscan:PS50158	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00343	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
SUPFAM:SSF57756	EnsemblPlantsGene:TraesCS4A01G367700	EnsemblPlants:TraesCS4A01G367700.1	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	TIGR:cd00079
TIGR:cd00268	TIGR:cd12938	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4A:+:640894422..640900423

Molecular Weight (calculated)

81695.4 Da

IEP (calculated)

7.604

GRAVY (calculated)

-0.340

Length

765 amino acids

Sequence
(BLAST)

001: MASLLTLPSL SLSSPSGGAG LAPALRLRAA FRCWALGRRW AGAAAAIASP NSVLSEHAFK RLGLGGGSDD EDDEGYGSDQ EGPAVEGDAD ELAISRLGLP
101: AQLVATLEKR GITHLFPIQR AVLIPALEGR DLIARAKTGT GKTLAFGIPM IKQIIEQDEG RTPGRGRIPR ALVLAPTREL AKQVEKEIME SAPKLSTVCV
201: YGGVSYNTQQ NALSRGVDVV VGTPGRLIDL INGGSLQLGE VRYLVLDEAD QMLAVGFEED VETILQQLPA ERQSMLFSAT MPSWVKKLSR RYLNNPLTID
301: LVGDQDEKLA EGIKLFAIPL TTTSKRTILS DLITVYAKGG KTIVFTRTKR DADEVSLALT TSIASEALHG DISQHQRERT LNGFRQGKFT VLVATDVASR
401: GLDIPNVDLI IHYELPNDPE TFVHRSGRTG RAGKAGNAIL MFTTNQRRTV KSLERDVGCK FEFIGPPTME EVLDSSAEHV IATLRGVHPE SIQYFVPAAE
501: RLSQELGPTA LASALAHLSG FSQPPSSRSL ISHEQGSVTL QLTRDPAYAR GFFSPRSVTG FLSDVSPSAA DAVGKIYLIA DERVQGAVFD LPEEIAKDLL
601: TMELPEGNTL SKVTKLPVLQ DDGPATDSYG RFSNSDRGSR NRRGSSRGGM GGGSRGRGSW DSDEGFRRGG RSSSRPDNDI WSDDDFSGGG ARRSNRSSSP
701: GGGRSSYGGR GGSSSLGDRS SSFGERSSSY GGRGGSSFGS RDRSFSGACF TCGQSGHRAS DCPNK

Best Arabidopsis Sequence Match ( AT5G26742.2 )
(BLAST)

001: MASTVGVPSL YQVPHLEISK PNSKKRSNCL SLSLDKPFFT PLSLVRRTRR IHSSSLLVPS AVATPNSVLS EEAFKSLGLS DHDEYDLDGD NNNVEADDGE
101: ELAISKLSLP QRLEESLEKR GITHLFPIQR AVLVPALQGR DIIARAKTGT GKTLAFGIPI IKRLTEEAGD YTAFRRSGRL PKFLVLAPTR ELAKQVEKEI
201: KESAPYLSTV CVYGGVSYTI QQSALTRGVD VVVGTPGRII DLIEGRSLKL GEVEYLVLDE ADQMLAVGFE EAVESILENL PTKRQSMLFS ATMPTWVKKL
301: ARKYLDNPLN IDLVGDQDEK LAEGIKLYAI ATTSTSKRTI LSDLITVYAK GGKTIVFTQT KRDADEVSLA LSNSIATEAL HGDISQHQRE RTLNAFRQGK
401: FTVLVATDVA SRGLDIPNVD LVIHYELPND PETFVHRSGR TGRAGKEGSA ILMHTSSQKR TVRSLERDVG CHFEFISPPT VGDLLESSAD QVVATLNGVH
501: PDSIKFFSAT AQKLYEEKGT DALAAALAHL SGFSQPPSSR SLLSHEKGWV TLQLIRDPTN ARGFLSARSV TGFLSDLYRT AADEVGKIFL IADDRIQGAV
601: FDLPEEIAKE LLEKDVPEGN SLSMITKLPP LQDDGPSSDN YGRFSSRDRM PRGGGGSRGS RGGRGGSSRG RDSWGGDDDR GSRRSSGGGS SWSRGGSSSR
701: GSSDDWLIGG RSSSSSRAPS RERSFGGSCF ICGKSGHRAT DCPDKRGF

Arabidopsis Description

RH3RH3 [Source:UniProtKB/TrEMBL;Acc:A0A178UT03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.