CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 6
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96641	Soybean	nucleus	94.81	94.81
KRH33703	Soybean	plastid	74.58	78.12
KRG90413	Soybean	plastid	74.45	77.99
VIT_14s0060g00060.t01	Wine grape	plastid	74.71	75.39
GSMUA_Achr2P01980_001	Banana	nucleus	66.54	73.71
CDX80564	Canola	plastid	68.74	72.8
CDX87045	Canola	plastid	70.04	72.39
Solyc08g042050.2.1	Tomato	plastid	70.04	72.39
Bra020533.1-P	Field mustard	plastid	69.26	72.26
CDY05524	Canola	plastid	69.13	72.22
CDY66725	Canola	plastid	69.39	72.01
Bra036582.1-P	Field mustard	plastid	69.26	71.87
AT5G26742.2	Thale cress	plastid	69.65	71.79
Bra009900.1-P	Field mustard	plastid	69.13	71.26
CDY19766	Canola	plastid	70.04	70.96
CDY61108	Canola	plastid	69.0	70.93
Os03t0827700-01	Rice	nucleus	65.37	69.71
GSMUA_Achr11P...	Banana	plastid	69.0	68.73
Zm00001d012922_P003	Maize	plastid	65.5	67.79
KXG37219	Sorghum	plastid	67.32	67.58
Zm00001d034721_P002	Maize	plastid	65.89	67.02
TraesCS4A01G367700.1	Wheat	nucleus	65.63	66.14
TraesCS5D01G505700.2	Wheat	plastid	65.5	65.5
TraesCS5B01G504900.1	Wheat	plastid	64.2	61.57
KRH14557	Soybean	mitochondrion	20.62	49.23
KRH73571	Soybean	nucleus	36.45	47.23
KRH45952	Soybean	mitochondrion	34.5	43.97
KRG99044	Soybean	mitochondrion	36.19	43.39
KRH14556	Soybean	cytosol	15.95	42.86
KRH35418	Soybean	endoplasmic reticulum	31.39	34.72
KRG91400	Soybean	nucleus	31.13	34.63
KRH15837	Soybean	nucleus	6.1	25.13
KRH42587	Soybean	nucleus	9.86	24.76
KRH15843	Soybean	cytosol	11.8	24.01
KRH15846	Soybean	nucleus	15.3	21.15
KRH44787	Soybean	nucleus	16.47	20.58

Protein Annotations

EntrezGene:100779706	MapMan:16.12.2.1.1.5	Gene3D:3.30.70.1800	Gene3D:3.40.50.300	Gene3D:4.10.60.10	EMBL:ACUP02002108
InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_03G226600	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787
InterPro:GUCT	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1JQZ9	InterPro:IPR001650	InterPro:IPR001878
InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KRH68372	ProteinID:KRH68372	ProteinID:KRH68372.1	InterPro:P-loop_NTPase
PFAM:PF00098	PFAM:PF00270	PFAM:PF00271	PFAM:PF08152	PFscan:PS50158	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00343
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	SUPFAM:SSF57756	UniParc:UPI0002339EC9	InterPro:Znf_CCHC
InterPro:Znf_CCHC_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:42876737..42882527

Molecular Weight (calculated)

83980.7 Da

IEP (calculated)

7.237

GRAVY (calculated)

-0.400

Length

771 amino acids

Sequence
(BLAST)

001: MASIIGVSSI YQTPSLELYQ RPNTAASTSS VRLQCLDSKS HFNNVLRAHQ RHSTGPGLKP TPTTFVPSAV ATPNSSLLSE EAFKGLGRDF DEFDHASDSD
101: SAAESVHPDE LDISKLDLPS RLVESLQSRG ITQLFPIQRA VLVPALEGRD IIARAKTGTG KTLAFGIPII KGLTEDEHAP SHRRSGRLPR FLVLAPTREL
201: AKQVEKEIKE SAPYLSTVCV YGGVSYVTQQ GALSRGVDVV VGTPGRIIDL INGNSLKLSE VQYLVLDEAD QMLAVGFEED VEMILENLPA QRQSMLFSAT
301: MPSWVKKLAR KYLNNPLTID LVGDEEEKLA EGIKLYAIAA TATSKRTILS DLVTVYAKGG KTIVFTQTKR DADEVSLSLT NSIMSEALHG DISQHQRERT
401: LNGFRQGKFT VLVATDVAAR GLDIPNVDLI IHYELPNDPE TFVHRSGRTG RAGKQGNAIL LYTSSQRRTV RSLERDVGCK FEFVSAPAME EVLESSAEQV
501: VATLGGVHPE SVQFFTPTAQ RLIEEQGTSA LAAALAQLSG FSRPPSSRSL ITHEQGWITL QLTRDSDSRR YFSARSITGF LSDVYPAAAD EVGKIHLIAD
601: EKVQGAVFDL PEEIAKELLN RDIPPGNTVS KITKLPSLQD DGPPSDFYGR FSDRDRSSRR GSTSRGGFSS RGGSASRDRR GFKSSRGWDV EDSGDDFGDQ
701: SSRRGGRNFK TGNSWSRAAG KSSGDDWLIG GGRRSSRPSS SDRFGGTCFN CGESGHRASD CPNVSNRRSF F

Best Arabidopsis Sequence Match ( AT5G26742.1 )
(BLAST)

001: MASTVGVPSL YQVPHLEISK PNSKKRSNCL SLSLDKPFFT PLSLVRRTRR IHSSSLLVPS AVATPNSVLS EEAFKSLGLS DHDEYDLDGD NNNVEADDGE
101: ELAISKLSLP QRLEESLEKR GITHLFPIQR AVLVPALQGR DIIARAKTGT GKTLAFGIPI IKRLTEEAGD YTAFRRSGRL PKFLVLAPTR ELAKQVEKEI
201: KESAPYLSTV CVYGGVSYTI QQSALTRGVD VVVGTPGRII DLIEGRSLKL GEVEYLVLDE ADQMLAVGFE EAVESILENL PTKRQSMLFS ATMPTWVKKL
301: ARKYLDNPLN IDLVGDQDEK LAEGIKLYAI ATTSTSKRTI LSDLITVYAK GGKTIVFTQT KRDADEVSLA LSNSIATEAL HGDISQHQRE RTLNAFRQGK
401: FTVLVATDVA SRGLDIPNVD LVIHYELPND PETFVHRSGR TGRAGKEGSA ILMHTSSQKR TVRSLERDVG CHFEFISPPT VGDLLESSAD QVVATLNGVH
501: PDSIKFFSAT AQKLYEEKGT DALAAALAHL SGFSQPPSSR SLLSHEKGWV TLQLIRDPTN ARGFLSARSV TGFLSDLYRT AADEVGKIFL IADDRIQGAV
601: FDLPEEIAKE LLEKDVPEGN SLSMITKLPP LQDDGPSSDN YGRFSSRDRM PRGGGGSRGS RGGRGGSSRG RDSWGGDDDR GSRRSSGGGS SWSRGGSSSR
701: GSSDDWLIGG RSSSSSRAPS RESFGGSCFI CGKSGHRATD CPDKRGF

Arabidopsis Description

RH3RH3 [Source:UniProtKB/TrEMBL;Acc:A0A178UT03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.