CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93223
KRH13056

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62190.1	KRG93223	AT1G53720.1	16497658
AT5G62190.1	KRH13056	AT1G53720.1	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35418	Soybean	endoplasmic reticulum	92.64	92.11
VIT_16s0022g02110.t01	Wine grape	plastid	69.99	69.88
GSMUA_Achr7P05930_001	Banana	nucleus	60.89	69.52
PGSC0003DMT400079640	Potato	nucleus	66.23	68.1
Solyc03g007010.2.1	Tomato	nucleus	66.96	68.04
PGSC0003DMT400071859	Potato	cytosol, nucleus, plastid	63.78	66.07
CDX87236	Canola	nucleus	60.61	65.93
CDY16789	Canola	nucleus	60.17	65.67
Bra035903.1-P	Field mustard	nucleus	59.45	65.09
Bra029275.1-P	Field mustard	nucleus	61.04	64.19
AT5G62190.1	Thale cress	nucleus	61.9	63.93
Solyc06g035450.2.1	Tomato	nucleus	36.8	63.59
HORVU5Hr1G080170.2	Barley	nucleus	59.31	63.43
CDY28363	Canola	plastid	24.96	63.14
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	22.51	62.4
GSMUA_Achr4P19590_001	Banana	nucleus	63.64	61.25
Zm00001d006160_P001	Maize	nucleus	61.76	60.8
Os09t0520700-01	Rice	nucleus, plastid	60.46	60.2
Zm00001d021196_P004	Maize	nucleus	61.18	59.97
EER97062	Sorghum	nucleus	61.47	59.92
TraesCS5D01G315900.1	Wheat	mitochondrion, nucleus	60.32	59.71
TraesCS5B01G309500.1	Wheat	nucleus	60.17	59.57
TraesCS5A01G308900.1	Wheat	nucleus	59.88	59.37
Zm00001d035226_P001	Maize	plasma membrane	19.62	39.08
Zm00001d049075_P001	Maize	extracellular, golgi	25.83	36.98
Zm00001d035797_P001	Maize	mitochondrion	30.3	36.84
Zm00001d050438_P002	Maize	extracellular	16.02	34.47
KRH14557	Soybean	mitochondrion	15.87	34.06
Zm00001d024138_P001	Maize	plastid	13.85	34.04
Zm00001d046048_P001	Maize	cytosol	9.09	33.51
Zm00001d049254_P001	Maize	cytosol	9.24	33.51
CDY34116	Canola	cytosol	24.39	33.14
KRH33703	Soybean	plastid	34.34	32.34
KRG90413	Soybean	plastid	34.2	32.2
KRH73571	Soybean	nucleus	26.84	31.26
KRH68372	Soybean	nucleus	34.63	31.13
KRG96641	Soybean	nucleus	34.49	31.0
KRH45952	Soybean	mitochondrion	26.98	30.91
KRG99044	Soybean	mitochondrion	27.13	29.24
KRH14556	Soybean	cytosol	11.54	27.87
KRH15837	Soybean	nucleus	6.64	24.6
KRH42587	Soybean	nucleus	10.39	23.45
CDY44622	Canola	cytosol	25.4	20.37
KRH15843	Soybean	cytosol	11.11	20.32
KRH15846	Soybean	nucleus	14.86	18.46
KRH44787	Soybean	nucleus	15.73	17.67

Protein Annotations

EntrezGene:100820207	Gene3D:3.30.70.2280	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02012682	InterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlantsGene:GLYMA_20G152200	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:GUCT	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	UniProt:I1NGM0	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KRG91400
ProteinID:KRG91400	ProteinID:KRG91400.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF08152
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF237
InterPro:RBD_domain_sf	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
SUPFAM:SSF54928	UniParc:UPI000233DE12	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:39108077..39112941

Molecular Weight (calculated)

75188.1 Da

IEP (calculated)

9.527

GRAVY (calculated)

-0.417

Length

693 amino acids

Sequence
(BLAST)

001: MPSLSLSDPD TPKPIAKKKT KTQSLTDPDL DGVSGKKTKK RKASDLEQEA MPPAAYNNDG DDETSSDLVQ PEPASREDDN KNKKKKKKKV VKSEEKEQPL
101: VTEANGEKKE DPNALSNFRI SEPLRQKLKE KGIESLFPIQ AMTFDTVLDG SDLVGRARTG QGKTLAFVLP ILESLINGPT KASRKTGFGR TPSVLVLLPT
201: RELACQVHAD FDVYGGAMGL SSCCLYGGAP YQGQEIKLRR GVDIVIGTPG RVKDHIEKGN IDLSQLKFRV LDEADEMLRM GFVEDVEMIL GKVENVNKVQ
301: TLLFSATLPD WVKQIAARFL KPDKKTADLV GNTKMKASIN VRHIVLPCTS SARAQLIPDI IRCYSSGGRT IVFTETKESA SQLAGILTGA KALHGDIQQS
401: TREVTLSGFR SGKFMTLVAT NVAARGLDIN DVQLIIQCEP PRDVEAYIHR SGRTGRAGNT GVAVMLYDPK RSNISRIERE SGVKFEHVSA PQPDDIAKAV
501: SGEAAEMIIQ VSDSVVPAFK SAAEDLLNNS GLPVIELLAK ALAKAVGYTE VKQRSLLTSM ENYVTLLLET GKPIYTQSFA YGVLRRFLPE EKVEAVKGLS
601: ITADGNGVVF DVAAKDLDIY LNGQENASNV SLEIVKTLPQ LQQMEQHQRG GRFGDGGGRG YRFGGRGGGG RNGRFSNGGG RGGRGGNWGG KRW

Best Arabidopsis Sequence Match ( AT5G62190.1 )
(BLAST)

001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y

Arabidopsis Description

RH7DEAD-box ATP-dependent RNA helicase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39189]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.