Factsheet for Zm00001d024138_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d036620_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62190.1	Zm00001d036620_P001	AT1G53720.1	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050438_P002	Maize	extracellular	50.71	44.41
Zm00001d046048_P001	Maize	cytosol	28.01	42.02
Zm00001d049254_P001	Maize	cytosol	28.01	41.36
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	28.72	32.4
Zm00001d035226_P001	Maize	plasma membrane	36.17	29.31
Zm00001d049075_P001	Maize	extracellular, golgi	39.36	22.93
GSMUA_Achr7P05930_001	Banana	nucleus	38.3	17.79
Zm00001d035797_P001	Maize	mitochondrion	35.82	17.72
HORVU5Hr1G080170.2	Barley	nucleus	39.72	17.28
Zm00001d021196_P004	Maize	nucleus	42.91	17.11
Zm00001d006160_P001	Maize	nucleus	42.2	16.9
EER97062	Sorghum	nucleus	41.84	16.6
TraesCS5A01G308900.1	Wheat	nucleus	40.43	16.31
TraesCS5D01G315900.1	Wheat	mitochondrion, nucleus	40.07	16.14
TraesCS5B01G309500.1	Wheat	nucleus	40.07	16.14
Os09t0520700-01	Rice	nucleus, plastid	39.36	15.95
CDY28363	Canola	plastid	14.89	15.33
PGSC0003DMT400079640	Potato	nucleus	34.75	14.54
Solyc03g007010.2.1	Tomato	nucleus	34.4	14.22
PGSC0003DMT400071859	Potato	cytosol, nucleus, plastid	33.33	14.05
KRH35418	Soybean	endoplasmic reticulum	34.4	13.92
KRG91400	Soybean	nucleus	34.04	13.85
GSMUA_Achr4P19590_001	Banana	nucleus	34.75	13.61
VIT_16s0022g02110.t01	Wine grape	plastid	32.98	13.4
Bra029275.1-P	Field mustard	nucleus	30.85	13.2
AT5G62190.1	Thale cress	nucleus	30.85	12.97
CDX87236	Canola	nucleus	28.01	12.4
CDY16789	Canola	nucleus	26.95	11.97
Bra035903.1-P	Field mustard	nucleus	25.89	11.53
Zm00001d012922_P003	Maize	plastid	23.76	8.99
CDY34116	Canola	cytosol	15.96	8.82
Zm00001d008884_P001	Maize	cytosol	5.32	8.72
Zm00001d034721_P002	Maize	plastid	23.4	8.71
Zm00001d032793_P001	Maize	cytosol	1.77	7.94
Zm00001d030797_P001	Maize	mitochondrion	5.32	7.21
Zm00001d033226_P001	Maize	cytosol	3.19	7.2
Solyc06g035450.2.1	Tomato	nucleus	9.57	6.73
Zm00001d048578_P001	Maize	cytosol	5.32	6.41
Zm00001d031584_P001	Maize	cytosol	4.61	6.31
Zm00001d031050_P002	Maize	mitochondrion	13.48	6.22
Zm00001d041480_P001	Maize	mitochondrion	12.41	5.84
Zm00001d043739_P001	Maize	mitochondrion	4.26	5.77
Zm00001d018787_P001	Maize	mitochondrion	11.35	5.25
CDY44622	Canola	cytosol	14.89	4.86
Zm00001d018375_P001	Maize	nucleus	7.45	4.02
Zm00001d052036_P001	Maize	plastid	1.77	2.38

Protein Annotations

KEGG:00010+2.7.2.3	KEGG:00710+2.7.2.3	Gene3D:2.30.30.30	Gene3D:3.40.50.1260	MapMan:35.1	UniProt:A0A1D6IXQ7
ProteinID:AQK40691.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004386	GO:GO:0004618	GO:GO:0005975
GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0016787	InterPro:IPR014722
InterPro:IPR015824	PFAM:PF00162	PANTHER:PTHR11406	PANTHER:PTHR11406:SF11	InterPro:Phosphoglycerate_kinase	InterPro:Phosphoglycerate_kinase_N
InterPro:Phosphoglycerate_kinase_sf	InterPro:Rib_L2_dom2	SUPFAM:SSF53748	UniParc:UPI0008448F4E	EnsemblPlantsGene:Zm00001d024138	EnsemblPlants:Zm00001d024138_P001
EnsemblPlants:Zm00001d024138_T001	SEG:seg	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 7

Coordinates

chr10:-:49020418..49026280

Molecular Weight (calculated)

30483.8 Da

IEP (calculated)

8.919

GRAVY (calculated)

-0.028

Length

282 amino acids

Sequence
(BLAST)

001: MPCTRPLQPS PAPALAPTIN GHGTGDIAGA EKAQRHSIGT SLVEEDKLEV ATSLIEKAKA KGVSLLLPSD IVVANKFTAD AGSKLQSCRN IVRTLSLNSK
101: CYILMLWDIL NSNTGVAVML YEPRYKHNVS RLERESRVKF EHISVPQPTD VAQSAGSEAA DAIASVSDIV IPIFRQQVEQ LLSSSSLSAA DLLAKALAKV
201: VVKICVLGLH GHKEKIIVIF LGGLQYTTSS NWQTDVVTWF DVDNVVMVTG GRSTRRVGVI KNWSDQELGE AQGHLRGHRR AA

Best Arabidopsis Sequence Match ( AT5G62190.1 )
(BLAST)

001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y

Arabidopsis Description

RH7DEAD-box ATP-dependent RNA helicase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39189]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.