Factsheet for Zm00001d031050_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES17375	Sorghum	mitochondrion	92.31	91.26
Zm00001d041480_P001	Maize	mitochondrion	89.03	90.82
Os12t0611200-01	Rice	nucleus	80.52	78.34
TraesCS5D01G057800.1	Wheat	mitochondrion	72.67	73.88
TraesCS5B01G052100.1	Wheat	mitochondrion	72.01	73.7
TraesCS5A01G047300.2	Wheat	mitochondrion	73.81	73.21
HORVU5Hr1G011460.3	Barley	mitochondrion	74.14	72.48
Zm00001d008884_P001	Maize	cytosol	19.64	69.77
Zm00001d030797_P001	Maize	mitochondrion	22.09	64.9
CDY46330	Canola	nucleus	28.31	59.25
KRH14557	Soybean	mitochondrion	31.1	58.82
Zm00001d048578_P001	Maize	cytosol	22.42	58.55
CDY37406	Canola	mitochondrion	47.46	56.86
PGSC0003DMT400074131	Potato	plastid	46.32	56.83
KRH73571	Soybean	nucleus	55.16	56.64
Zm00001d018787_P001	Maize	mitochondrion	55.65	55.83
CDY46329	Canola	mitochondrion	49.75	55.37
Solyc07g044760.2.1	Tomato	plastid	56.63	54.92
KRH45952	Soybean	mitochondrion	53.19	53.72
VIT_12s0142g00670.t01	Wine grape	plastid	58.43	53.6
Bra023836.1-P	Field mustard	mitochondrion	54.01	53.48
AT3G22330.1	Thale cress	mitochondrion	53.68	53.25
KRG99044	Soybean	mitochondrion	55.65	52.88
Bra031349.1-P	Field mustard	mitochondrion	52.05	52.82
CDY10634	Canola	mitochondrion	52.05	52.82
CDY37408	Canola	mitochondrion	51.88	52.75
GSMUA_Achr7P00980_001	Banana	mitochondrion	44.52	52.51
KRH14556	Soybean	cytosol	24.22	51.57
AT3G22310.1	Thale cress	mitochondrion	51.23	51.31
Solyc12g006320.1.1	Tomato	plastid	53.19	50.54
GSMUA_Achr2P13080_001	Banana	plastid	58.76	48.65
Zm00001d032793_P001	Maize	cytosol	4.09	39.68
Zm00001d033226_P001	Maize	cytosol	7.53	36.8
Zm00001d034721_P002	Maize	plastid	44.84	36.15
Zm00001d012922_P003	Maize	plastid	43.7	35.84
Zm00001d031584_P001	Maize	cytosol	10.8	32.04
GSMUA_Achr2P13070_001	Banana	cytosol	60.39	31.22
Zm00001d043739_P001	Maize	mitochondrion	10.31	30.29
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	12.28	30.0
Zm00001d021196_P004	Maize	nucleus	31.59	27.3
Zm00001d006160_P001	Maize	nucleus	31.26	27.13
Zm00001d018375_P001	Maize	nucleus	18.17	21.22
Zm00001d050438_P002	Maize	extracellular	10.15	19.25
Zm00001d035797_P001	Maize	mitochondrion	16.53	17.72
Zm00001d035226_P001	Maize	plasma membrane	8.84	15.52
Zm00001d049075_P001	Maize	extracellular, golgi	12.28	15.5
Zm00001d024138_P001	Maize	plastid	6.22	13.48
Zm00001d052036_P001	Maize	plastid	4.58	13.33
Zm00001d049254_P001	Maize	cytosol	2.62	8.38
Zm00001d046048_P001	Maize	cytosol	2.13	6.91

Protein Annotations

EntrezGene:100501766	MapMan:16.12.2.2.1.4	Gene3D:3.40.50.300	UniProt:A0A096RQJ0	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
ProteinID:ONM02057.1	ProteinID:ONM02059.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF296	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000221E0CD	EnsemblPlantsGene:Zm00001d031050	EnsemblPlants:Zm00001d031050_P002	EnsemblPlants:Zm00001d031050_T002
SEG:seg	:	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 53

Coordinates

chr1:-:174872603..174876413

Molecular Weight (calculated)

63914.8 Da

IEP (calculated)

9.940

GRAVY (calculated)

-0.241

Length

611 amino acids

Sequence
(BLAST)

001: MYAVLRRAAP LRRRAVSALA TALLQQQPAA LDAVARRAPL PAAAWFHSSP AWLGFRETGA AGAAARAEFA ADNGSFYEED KRAAAGGGAA AEGLEIAKLG
101: ISSKIVERLA SKGITKLFPI QRAVLEPAMQ GRDMVGRAKT GTGKTLAFGI PIMDAIIRHN EKYKPGKFPL AIVLAPTREL AKQVEREFLD SSPLETLCVY
201: GGTPIMQQIR KLNYGVDVVI GTPGRVIDLL KRGSLSLAEI RFVVLDEADQ MLSVGFDLDV ETILERVPPQ RQTLMFSATM PTWIRKLTQK YLNNPVTVDL
301: VGEDDQKLAE GISLLAVSSE NREKPAVLGE LIKEHAKGGK CIVFTQTKRD ADRLSHNMSR SFQCEALHGD ISQSQRERTL AGFRDGRFNI LIATDVAARG
401: LDIPNVDLVI HFELPNSSEL FVHRSGRTGR AGKKGTAIVM YNYDQSRAVR VIERDVGCKF TELPKITVDG SDLLSGGFDS FGGGYSGSNY GRSGGFGGRG
501: GFGRSGGGGG YGNSGFGHSS GGYGRSGGGG FGDSGFGGRS GGGGGFGDSG FGGQSGGGGG FGDSGFGRTS GGGSGFGRSG GFGDSGSGRF GGGFGGSGSG
601: GFGGFGDKNS R

Best Arabidopsis Sequence Match ( AT3G22330.1 )
(BLAST)

001: MITTVLRRSL LDASKRNLSA SLTSINTVLF HNLAPAATRV SDLALIGSSD VKAGFPFGVE AKGIHFQSGP LDFRASMVSQ AGFAISESSE RRVGDSESVG
101: GDGLAISELG ISPEIVKALS SKGIEKLFPI QKAVLEPAME GRDMIGRART GTGKTLAFGI PIIDKIIKYN AKHGRGRNPL CLVLAPTREL ARQVEKEFRE
201: SAPSLDTICL YGGTPIGQQM RQLDYGVDVA VGTPGRVIDL MKRGALNLSE VQFVVLDEAD QMLQVGFAED VEIILEKLPE KRQSMMFSAT MPSWIRSLTK
301: KYLNNPLTVD LVGDSDQKLA DGITTYSIIA DSYGRASIIG PLVTEHAKGG KCIVFTQTKR DADRLSYALA RSFKCEALHG DISQSQRERT LAGFRDGHFN
401: ILVATDVAAR GLDVPNVDLI IHYELPNNTE TFVHRTGRTG RAGKKGSAIL IYSQDQSRAV KIIEREVGSR FTELPSIAVE RGSASMFEGI GSRSGGSFGG
501: GMRDRGSSFG GRSGGGGYGG SSGGYGGGRS GGSSNRYSGD SDRSGFGSFG MRSPEGYGSD RSSQSGGRSS FGGGRSGGSS NNRSSGFGDF GSDRSSQSGG
601: RSSFGGFGSN DGKRSY

Arabidopsis Description

RH53DEAD-box ATP-dependent RNA helicase 53, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.