Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr2P13080_001 | Banana | plastid | 50.76 | 81.3 |
GSMUA_Achr7P00980_001 | Banana | mitochondrion | 31.3 | 71.43 |
KRH14557 | Soybean | mitochondrion | 18.19 | 66.56 |
CDY46330 | Canola | nucleus | 15.74 | 63.7 |
CDY46329 | Canola | mitochondrion | 29.27 | 63.02 |
PGSC0003DMT400074131 | Potato | plastid | 26.23 | 62.25 |
CDY37406 | Canola | mitochondrion | 26.48 | 61.37 |
KRH73571 | Soybean | nucleus | 30.54 | 60.67 |
Zm00001d031050_P002 | Maize | mitochondrion | 31.22 | 60.39 |
Zm00001d041480_P001 | Maize | mitochondrion | 30.37 | 59.93 |
EES17375 | Sorghum | mitochondrion | 31.3 | 59.87 |
Bra023836.1-P | Field mustard | mitochondrion | 31.22 | 59.81 |
Solyc07g044760.2.1 | Tomato | plastid | 31.81 | 59.68 |
TraesCS5D01G057800.1 | Wheat | mitochondrion | 30.29 | 59.57 |
Os12t0611200-01 | Rice | nucleus | 31.64 | 59.55 |
TraesCS5B01G052100.1 | Wheat | mitochondrion | 30.03 | 59.46 |
TraesCS5A01G047300.2 | Wheat | mitochondrion | 30.71 | 58.93 |
AT3G22330.1 | Thale cress | mitochondrion | 30.46 | 58.44 |
HORVU5Hr1G011460.3 | Barley | mitochondrion | 30.88 | 58.4 |
CDY10634 | Canola | mitochondrion | 29.7 | 58.31 |
KRG99044 | Soybean | mitochondrion | 31.64 | 58.16 |
VIT_12s0142g00670.t01 | Wine grape | plastid | 32.74 | 58.11 |
CDY37408 | Canola | mitochondrion | 29.53 | 58.07 |
KRH45952 | Soybean | mitochondrion | 29.7 | 58.02 |
Bra031349.1-P | Field mustard | mitochondrion | 29.53 | 57.97 |
AT3G22310.1 | Thale cress | mitochondrion | 29.7 | 57.54 |
Solyc12g006320.1.1 | Tomato | plastid | 29.95 | 55.05 |
KRH14556 | Soybean | cytosol | 12.35 | 50.87 |
GSMUA_Achr2P01980_001 | Banana | nucleus | 23.69 | 40.23 |
GSMUA_Achr11P... | Banana | plastid | 24.11 | 36.82 |
GSMUA_Achr7P05930_001 | Banana | nucleus | 16.16 | 31.47 |
GSMUA_Achr4P19590_001 | Banana | nucleus | 16.84 | 27.64 |
GSMUA_Achr10P... | Banana | cytosol | 9.31 | 21.48 |
Protein Annotations
Gene3D:3.40.1090.10 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:Acyl_Trfase/lysoPLipase | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 |
GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSMUA_Achr2G13070_001 | EnsemblPlants:GSMUA_Achr2P13070_001 | EnsemblPlants:GSMUA_Achr2T13070_001 |
InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | UniProt:M0S7J8 |
InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 |
PANTHER:PTHR24031 | PANTHER:PTHR24031:SF326 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52151 |
SUPFAM:SSF52540 | SUPFAM:SSF81321 | TMHMM:TMhelix | UniParc:UPI000295F4EE | SEG:seg | : |
Description
DEAD-box ATP-dependent RNA helicase, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G13070_001]
Coordinates
chr2:+:15323027..15335623
Molecular Weight (calculated)
128003.0 Da
IEP (calculated)
8.644
GRAVY (calculated)
-0.044
Length
1182 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAPAPAPALL EPGVDVDKLS YEIFSILESK FLFGFDDHKP LPLQSSPASA SPVPPQPPAP RAPAGRVRIL SVDGGCRPSD ALLAAASLAR LESFLRDTPA
0101: RVADFFDVAA GSGAGGGPLG WVLRRKPGGL FRRVFGDATL RDTLKPADGY DFRIWEVCAA TCASPAAAVE MSSADGRTRI AAVGGGVSMG NPAAAAITHV
0201: LNNKQEFPFA ASVDELMVLS LGSSAAGVDS ASGRRRPVPS AAELVRIASE GVADMVDQAI AMAFGHNRTN NYVRIQANLF GLDNNYSART SNADRLICAM
0301: EERLSQRNVE SLLFRGKKIS DQTNAEKLEW FASELIKEHE RRKKSLIPVI VLKQVMTPRS SSWVAASASR RALAALVSSN FSLLPPSVAS ASSVPSSADG
0401: IVPFFRFAQQ IEFCGSQRRG IHFSAGPLGF RATDVAFAEY AVDEYYEEDR GSPEGVDEGL EIAKLGISQD IVTQLANRGI TKLFPIQRAV LEPAMQGQDM
0501: IGRARTGTGK TLAFGIPIMD KIIRFQAKHG CGRNPLAMVL APTRELARQV EKEFKESSKL YTLCVYGGSL ISQQMRALDS GVDVVVGTPG RIIDLLNRGA
0601: LNLSEIQFVV LDEADQMLNV GFAEDVERIL EKMPPKHQTL MFSATMPTWI QKLTRKYLKD PVNIDLIVVL LLLLLFMILH LYVSFPVVLK ILKFLCNVYL
0701: FFFLCYLLLF IFFFESTYVF HSFHLKDYVM LSQLFFPGVS FFYLINCLCD PALVFFNYLK MTLDLKSLFL FLLSTNCHLL RCFTNTMLFG INFLLLGFYG
0801: FTNKFEIIFY GKYLMYHIYP DKVVITLHSD DQKIAKASMF DVGDSDQKLA EGITLYSIVS DNYAKASILG PLIKEHAKGG KCILFTQTKR DADRLAYSMG
0901: RSFGCEALHG DISQGQRERT LAGFRDGRFN ILIATDVAAR GLDIPNVDLV IHYELPNTTE LFVHRSGRTG RAGKKGSAIL IHSYDQNRLV RGIEQEIGCR
1001: FIELPKITVE GGGEDMIGSM RGGRFDSHGS GRMGGSGFGR GGNYGRSRGF GDSGRHTGGF GESGSGRFGS FGGSTSGAPS RPGGSNFGRS DGFGNFSSGR
1101: SGGLGDSGAG RFGNFGSSGS GRFGSFGNSD SGRSSSFNDS SPSRSSGYGG SGRSSSFGSF GGGSSKDDGD DGWPGRSFMS SS
0101: RVADFFDVAA GSGAGGGPLG WVLRRKPGGL FRRVFGDATL RDTLKPADGY DFRIWEVCAA TCASPAAAVE MSSADGRTRI AAVGGGVSMG NPAAAAITHV
0201: LNNKQEFPFA ASVDELMVLS LGSSAAGVDS ASGRRRPVPS AAELVRIASE GVADMVDQAI AMAFGHNRTN NYVRIQANLF GLDNNYSART SNADRLICAM
0301: EERLSQRNVE SLLFRGKKIS DQTNAEKLEW FASELIKEHE RRKKSLIPVI VLKQVMTPRS SSWVAASASR RALAALVSSN FSLLPPSVAS ASSVPSSADG
0401: IVPFFRFAQQ IEFCGSQRRG IHFSAGPLGF RATDVAFAEY AVDEYYEEDR GSPEGVDEGL EIAKLGISQD IVTQLANRGI TKLFPIQRAV LEPAMQGQDM
0501: IGRARTGTGK TLAFGIPIMD KIIRFQAKHG CGRNPLAMVL APTRELARQV EKEFKESSKL YTLCVYGGSL ISQQMRALDS GVDVVVGTPG RIIDLLNRGA
0601: LNLSEIQFVV LDEADQMLNV GFAEDVERIL EKMPPKHQTL MFSATMPTWI QKLTRKYLKD PVNIDLIVVL LLLLLFMILH LYVSFPVVLK ILKFLCNVYL
0701: FFFLCYLLLF IFFFESTYVF HSFHLKDYVM LSQLFFPGVS FFYLINCLCD PALVFFNYLK MTLDLKSLFL FLLSTNCHLL RCFTNTMLFG INFLLLGFYG
0801: FTNKFEIIFY GKYLMYHIYP DKVVITLHSD DQKIAKASMF DVGDSDQKLA EGITLYSIVS DNYAKASILG PLIKEHAKGG KCILFTQTKR DADRLAYSMG
0901: RSFGCEALHG DISQGQRERT LAGFRDGRFN ILIATDVAAR GLDIPNVDLV IHYELPNTTE LFVHRSGRTG RAGKKGSAIL IHSYDQNRLV RGIEQEIGCR
1001: FIELPKITVE GGGEDMIGSM RGGRFDSHGS GRMGGSGFGR GGNYGRSRGF GDSGRHTGGF GESGSGRFGS FGGSTSGAPS RPGGSNFGRS DGFGNFSSGR
1101: SGGLGDSGAG RFGNFGSSGS GRFGSFGNSD SGRSSSFNDS SPSRSSGYGG SGRSSSFGSF GGGSSKDDGD DGWPGRSFMS SS
001: MITTVLRRSL LDASKRNLSA SLTSINTVLF HNLAPAATRV SDLALIGSSD VKAGFPFGVE AKGIHFQSGP LDFRASMVSQ AGFAISESSE RRVGDSESVG
101: GDGLAISELG ISPEIVKALS SKGIEKLFPI QKAVLEPAME GRDMIGRART GTGKTLAFGI PIIDKIIKYN AKHGRGRNPL CLVLAPTREL ARQVEKEFRE
201: SAPSLDTICL YGGTPIGQQM RQLDYGVDVA VGTPGRVIDL MKRGALNLSE VQFVVLDEAD QMLQVGFAED VEIILEKLPE KRQSMMFSAT MPSWIRSLTK
301: KYLNNPLTVD LVGDSDQKLA DGITTYSIIA DSYGRASIIG PLVTEHAKGG KCIVFTQTKR DADRLSYALA RSFKCEALHG DISQSQRERT LAGFRDGHFN
401: ILVATDVAAR GLDVPNVDLI IHYELPNNTE TFVHRTGRTG RAGKKGSAIL IYSQDQSRAV KIIEREVGSR FTELPSIAVE RGSASMFEGI GSRSGGSFGG
501: GMRDRGSSFG GRSGGGGYGG SSGGYGGGRS GGSSNRYSGD SDRSGFGSFG MRSPEGYGSD RSSQSGGRSS FGGGRSGGSS NNRSSGFGDF GSDRSSQSGG
601: RSSFGGFGSN DGKRSY
101: GDGLAISELG ISPEIVKALS SKGIEKLFPI QKAVLEPAME GRDMIGRART GTGKTLAFGI PIIDKIIKYN AKHGRGRNPL CLVLAPTREL ARQVEKEFRE
201: SAPSLDTICL YGGTPIGQQM RQLDYGVDVA VGTPGRVIDL MKRGALNLSE VQFVVLDEAD QMLQVGFAED VEIILEKLPE KRQSMMFSAT MPSWIRSLTK
301: KYLNNPLTVD LVGDSDQKLA DGITTYSIIA DSYGRASIIG PLVTEHAKGG KCIVFTQTKR DADRLSYALA RSFKCEALHG DISQSQRERT LAGFRDGHFN
401: ILVATDVAAR GLDVPNVDLI IHYELPNNTE TFVHRTGRTG RAGKKGSAIL IYSQDQSRAV KIIEREVGSR FTELPSIAVE RGSASMFEGI GSRSGGSFGG
501: GMRDRGSSFG GRSGGGGYGG SSGGYGGGRS GGSSNRYSGD SDRSGFGSFG MRSPEGYGSD RSSQSGGRSS FGGGRSGGSS NNRSSGFGDF GSDRSSQSGG
601: RSSFGGFGSN DGKRSY
Arabidopsis Description
RH53DEAD-box ATP-dependent RNA helicase 53, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.