Factsheet for GSMUA_Achr7P00980_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14557	Soybean	mitochondrion	37.84	60.68
PGSC0003DMT400074131	Potato	plastid	52.12	54.22
CDY37406	Canola	mitochondrion	52.9	53.73
GSMUA_Achr2P13080_001	Banana	plastid	73.55	51.63
CDY46329	Canola	mitochondrion	54.25	51.18
KRH73571	Soybean	nucleus	53.47	46.55
CDY10634	Canola	mitochondrion	53.67	46.18
CDY37408	Canola	mitochondrion	53.47	46.09
TraesCS5B01G052100.1	Wheat	mitochondrion	53.09	46.06
Bra031349.1-P	Field mustard	mitochondrion	53.47	46.01
TraesCS5D01G057800.1	Wheat	mitochondrion	52.9	45.59
Bra023836.1-P	Field mustard	mitochondrion	53.86	45.22
CDY46330	Canola	nucleus	25.29	44.86
AT3G22310.1	Thale cress	mitochondrion	52.7	44.75
Zm00001d041480_P001	Maize	mitochondrion	51.74	44.74
KRH45952	Soybean	mitochondrion	52.12	44.63
Os12t0611200-01	Rice	nucleus	54.05	44.59
Zm00001d031050_P002	Maize	mitochondrion	52.51	44.52
VIT_12s0142g00670.t01	Wine grape	plastid	56.95	44.29
EES17375	Sorghum	mitochondrion	52.7	44.17
AT3G22330.1	Thale cress	mitochondrion	52.51	44.16
TraesCS5A01G047300.2	Wheat	mitochondrion	52.32	43.99
HORVU5Hr1G011460.3	Barley	mitochondrion	52.51	43.52
Solyc07g044760.2.1	Tomato	plastid	52.7	43.33
KRG99044	Soybean	mitochondrion	53.09	42.77
Solyc12g006320.1.1	Tomato	plastid	52.51	42.3
GSMUA_Achr2P13070_001	Banana	cytosol	71.43	31.3
GSMUA_Achr2P01980_001	Banana	nucleus	40.93	30.46
GSMUA_Achr11P...	Banana	plastid	42.28	28.29
KRH14556	Soybean	cytosol	15.06	27.18
GSMUA_Achr7P05930_001	Banana	nucleus	27.99	23.89
GSMUA_Achr4P19590_001	Banana	nucleus	29.15	20.97
GSMUA_Achr10P...	Banana	cytosol	18.53	18.75

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSMUA_Achr7G00980_001	EnsemblPlants:GSMUA_Achr7P00980_001	EnsemblPlants:GSMUA_Achr7T00980_001	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M0TDN8	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SUPFAM:SSF52540	UniParc:UPI0002948494	SEG:seg

Description

DEAD-box ATP-dependent RNA helicase 53 [Source:GMGC_GENE;Acc:GSMUA_Achr7G00980_001]

Coordinates

chr7:-:771118..775240

Molecular Weight (calculated)

58321.1 Da

IEP (calculated)

9.159

GRAVY (calculated)

-0.050

Length

518 amino acids

Sequence
(BLAST)

001: MNFLFRRSSS ISASASRRTP AALVSLESPL LIPTHSVAPF SCVAGGCLSF FRPFPAEKIG FRSARRREFH FLALPLRFRA TDVARADYAF DNYEEDKDSS
101: KRGSDELEIA KLGISQDIVT QLANRGITKL FPMQVLRGSN CLGVWIYRAV LEPAMRGHDM IGLAKTSTGK TLAFGIPIMD NIIRFQAKNG CGRNPLAMVL
201: VPIRELARQV EKEFRESSRL YTICVYGGSP INQQMRALNY GVDVVVGTPG RIFNLLNRGA LNLSDVQFVV LDETDQMLNV GFAEDVERIL EKMPQKHQTM
301: MFSATMPTWI RKLTQRFLKD PINIDLLYCA KVQVNIQHKM HPALLLFINV GESDLKLTEG ITLYSIVSDN YAKPSILGPL IKEHAKGGKC IVFTQIKHDA
401: DRLAYAVGRR FGCEVLHGDI SQSQRKRTLI YIPNVDLVIH YELPNTSELF VHRSGRTGQA GKKGIAILIH SYEQNRLVRG IEQDIGCRFI EASYSFYDVK
501: LCELLDQLTQ CVIYIDLF

Best Arabidopsis Sequence Match ( AT3G22330.1 )
(BLAST)

001: MITTVLRRSL LDASKRNLSA SLTSINTVLF HNLAPAATRV SDLALIGSSD VKAGFPFGVE AKGIHFQSGP LDFRASMVSQ AGFAISESSE RRVGDSESVG
101: GDGLAISELG ISPEIVKALS SKGIEKLFPI QKAVLEPAME GRDMIGRART GTGKTLAFGI PIIDKIIKYN AKHGRGRNPL CLVLAPTREL ARQVEKEFRE
201: SAPSLDTICL YGGTPIGQQM RQLDYGVDVA VGTPGRVIDL MKRGALNLSE VQFVVLDEAD QMLQVGFAED VEIILEKLPE KRQSMMFSAT MPSWIRSLTK
301: KYLNNPLTVD LVGDSDQKLA DGITTYSIIA DSYGRASIIG PLVTEHAKGG KCIVFTQTKR DADRLSYALA RSFKCEALHG DISQSQRERT LAGFRDGHFN
401: ILVATDVAAR GLDVPNVDLI IHYELPNNTE TFVHRTGRTG RAGKKGSAIL IYSQDQSRAV KIIEREVGSR FTELPSIAVE RGSASMFEGI GSRSGGSFGG
501: GMRDRGSSFG GRSGGGGYGG SSGGYGGGRS GGSSNRYSGD SDRSGFGSFG MRSPEGYGSD RSSQSGGRSS FGGGRSGGSS NNRSSGFGDF GSDRSSQSGG
601: RSSFGGFGSN DGKRSY

Arabidopsis Description

RH53DEAD-box ATP-dependent RNA helicase 53, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.