Factsheet for VIT_12s0142g00670.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008884_P001	Maize	cytosol	20.27	78.49
Zm00001d030797_P001	Maize	mitochondrion	22.67	72.6
Zm00001d048578_P001	Maize	cytosol	23.27	66.24
CDY46330	Canola	nucleus	28.53	65.07
Os07t0143700-01	Rice	plastid	32.13	65.05
CDY46329	Canola	mitochondrion	53.3	64.66
CDY37406	Canola	mitochondrion	48.95	63.92
KRH73571	Soybean	nucleus	57.06	63.87
PGSC0003DMT400074131	Potato	plastid	47.75	63.86
HORVU2Hr1G060640.15	Barley	cytosol	50.0	62.36
AT3G22330.1	Thale cress	mitochondrion	56.76	61.36
CDY37408	Canola	mitochondrion	54.95	60.9
CDY10634	Canola	mitochondrion	54.95	60.8
Bra023836.1-P	Field mustard	mitochondrion	56.16	60.62
Bra031349.1-P	Field mustard	mitochondrion	54.65	60.47
EER97966	Sorghum	mitochondrion	54.65	60.47
KRH45952	Soybean	mitochondrion	54.8	60.33
Solyc07g044760.2.1	Tomato	plastid	56.91	60.16
AT3G22310.1	Thale cress	mitochondrion	54.8	59.84
TraesCS2A01G253700.1	Wheat	mitochondrion	55.41	59.61
Zm00001d018787_P001	Maize	mitochondrion	54.35	59.44
TraesCS2D01G254200.1	Wheat	mitochondrion	54.8	58.97
TraesCS2B01G273300.1	Wheat	plastid	54.5	58.64
Zm00001d041480_P001	Maize	mitochondrion	52.7	58.6
Zm00001d031050_P002	Maize	mitochondrion	53.6	58.43
EES17375	Sorghum	mitochondrion	53.9	58.09
KRG99044	Soybean	mitochondrion	55.71	57.7
GSMUA_Achr7P00980_001	Banana	mitochondrion	44.29	56.95
TraesCS5B01G052100.1	Wheat	mitochondrion	50.9	56.78
TraesCS5D01G057800.1	Wheat	mitochondrion	51.05	56.57
TraesCS5A01G047300.2	Wheat	mitochondrion	51.95	56.17
Os12t0611200-01	Rice	nucleus	52.85	56.05
Solyc12g006320.1.1	Tomato	plastid	54.05	55.99
HORVU5Hr1G011460.3	Barley	mitochondrion	51.65	55.04
GSMUA_Achr2P13080_001	Banana	plastid	57.51	51.9
VIT_08s0007g03740.t01	Wine grape	extracellular	4.95	43.42
VIT_14s0060g00060.t01	Wine grape	plastid	44.29	38.61
GSMUA_Achr2P13070_001	Banana	cytosol	58.11	32.74
VIT_16s0022g02110.t01	Wine grape	plastid	27.93	26.8
VIT_10s0003g04000.t01	Wine grape	nucleus	17.72	22.87

Protein Annotations

EntrezGene:100250610	wikigene:100250610	MapMan:16.12.2.2.1.4	Gene3D:3.40.50.300	EMBL:AM426701	ProteinID:CAN60235
ProteinID:CAN60235.1	ProteinID:CCB56412	ProteinID:CCB56412.1	InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F6HP06	EMBL:FN595999
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
EntrezGene:LOC100250610	wikigene:LOC100250610	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	TIGR:TC60406	UniParc:UPI00019844A0	ArrayExpress:VIT_12s0142g00670	EnsemblPlantsGene:VIT_12s0142g00670
EnsemblPlants:VIT_12s0142g00670.t01	unigene:Vvi.14919	RefSeq:XP_002284103	RefSeq:XP_002284103.1	SEG:seg	:

Description

No Description!

Coordinates

chr12:+:606423..614371

Molecular Weight (calculated)

70908.6 Da

IEP (calculated)

9.990

GRAVY (calculated)

-0.326

Length

666 amino acids

Sequence
(BLAST)

001: MMNIISRKSS SLASVKAPIR ALASVPHVHS LLHFHIHPPI STSASDAVVA RNVVTSAAPI PPLSGLLGFS GFRVRNFRSQ SGPLDFRASV VSRAEYAVAD
101: FSDEEKSSKG GDEGLEISKL GIAQEIVSAL ANKGITKLFP IQRAVLEPAM QGRDMIGRAR TGTGKTLAFG IPIMDKVIQY NAKHGRGRNP LALVLAPTRE
201: LARQVEKEFC ESAPNLDTLC VYGGTPISRQ MNSLDYGVDV VVGTPGRIID LIKRGALNLS EVQFVVLDEA DQMLAVGFEE DVEMILEKLP QNRQSMMFSA
301: TMPSWIRKLT QKYLKNPLTI DLVGDSDQKL AEGISLYSIA SEMYEKASIV GPLITEHAKG GKCIVFTQTK RDADRLAYAM ARNFRCEALH GDISQSQRER
401: TLSGFRDGHF NVLVATDVAA RGLDIPNVDL IIHYELPNSS EIFVHRSGRT GRAGKKGTAI LIYAEQQART VRFIERDIGC KFSELPRIAI EGGSRDMFSD
501: MGGGGDGGRF GSFGSRGGGR VGGGFGRSGS SFGRSGGYGE SGSGRSGSFG GFGSSRSGGG SSSSRSGNFG GSSFGRSGEF GDTIGSDRSS GFGNSSGSHR
601: SSGFGNFGGS DRSSGFRNPG SGRSSGSDST RLSRTSGGFN DSFSSRFGDF GDDRSNNGQS TGRRSF

Best Arabidopsis Sequence Match ( AT3G22330.1 )
(BLAST)

001: MITTVLRRSL LDASKRNLSA SLTSINTVLF HNLAPAATRV SDLALIGSSD VKAGFPFGVE AKGIHFQSGP LDFRASMVSQ AGFAISESSE RRVGDSESVG
101: GDGLAISELG ISPEIVKALS SKGIEKLFPI QKAVLEPAME GRDMIGRART GTGKTLAFGI PIIDKIIKYN AKHGRGRNPL CLVLAPTREL ARQVEKEFRE
201: SAPSLDTICL YGGTPIGQQM RQLDYGVDVA VGTPGRVIDL MKRGALNLSE VQFVVLDEAD QMLQVGFAED VEIILEKLPE KRQSMMFSAT MPSWIRSLTK
301: KYLNNPLTVD LVGDSDQKLA DGITTYSIIA DSYGRASIIG PLVTEHAKGG KCIVFTQTKR DADRLSYALA RSFKCEALHG DISQSQRERT LAGFRDGHFN
401: ILVATDVAAR GLDVPNVDLI IHYELPNNTE TFVHRTGRTG RAGKKGSAIL IYSQDQSRAV KIIEREVGSR FTELPSIAVE RGSASMFEGI GSRSGGSFGG
501: GMRDRGSSFG GRSGGGGYGG SSGGYGGGRS GGSSNRYSGD SDRSGFGSFG MRSPEGYGSD RSSQSGGRSS FGGGRSGGSS NNRSSGFGDF GSDRSSQSGG
601: RSSFGGFGSN DGKRSY

Arabidopsis Description

RH53DEAD-box ATP-dependent RNA helicase 53, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.