Factsheet for VIT_08s0007g03740.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
nucleus 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0022g02110.t01	Wine grape	plastid	69.74	7.64
VIT_12s0142g00670.t01	Wine grape	plastid	43.42	4.95
VIT_14s0060g00060.t01	Wine grape	plastid	47.37	4.71
VIT_10s0003g04000.t01	Wine grape	nucleus	27.63	4.07
Zm00001d032793_P001	Maize	cytosol	2.63	3.17
Zm00001d031584_P001	Maize	cytosol	6.58	2.43
Zm00001d043739_P001	Maize	mitochondrion	6.58	2.4

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CCB55409	ProteinID:CCB55409.1	UniProt:F6HKI7	EMBL:FN595991
GO:GO:0003674	GO:GO:0003824	GO:GO:0004004	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_C	InterPro:IPR001650	InterPro:P-loop_NTPase
PFAM:PF00271	PANTHER:PTHR24031	PANTHER:PTHR24031:SF346	SUPFAM:SSF52540	SignalP:SignalP-noTM	UniParc:UPI000210A156
ArrayExpress:VIT_08s0007g03740	EnsemblPlantsGene:VIT_08s0007g03740	EnsemblPlants:VIT_08s0007g03740.t01	:	:	:

Description

No Description!

Coordinates

chr8:+:17677547..17678338

Molecular Weight (calculated)

8434.4 Da

IEP (calculated)

9.368

GRAVY (calculated)

-0.018

Length

76 amino acids

Sequence
(BLAST)

1: MGKSLKMLFH LPSFMTLVAK NVTARGLDIN DVQLIIQCEP PRDVEAYTHQ SGRTGRADNA RVAVMLLIQE GPISLR

Best Arabidopsis Sequence Match ( AT5G62190.1 )
(BLAST)

001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y

Arabidopsis Description

RH7DEAD-box ATP-dependent RNA helicase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39189]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.