Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 7
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46329 | Canola | mitochondrion | 77.44 | 86.89 |
| Bra023836.1-P | Field mustard | mitochondrion | 85.39 | 85.25 |
| AT3G22310.1 | Thale cress | mitochondrion | 78.73 | 79.51 |
| Zm00001d008884_P001 | Maize | cytosol | 20.78 | 74.42 |
| Zm00001d030797_P001 | Maize | mitochondrion | 22.56 | 66.83 |
| Zm00001d048578_P001 | Maize | cytosol | 23.05 | 60.68 |
| KRH73571 | Soybean | nucleus | 58.6 | 60.67 |
| KRH45952 | Soybean | mitochondrion | 58.6 | 59.67 |
| PGSC0003DMT400074131 | Potato | plastid | 47.73 | 59.04 |
| KRG99044 | Soybean | mitochondrion | 60.23 | 57.7 |
| HORVU2Hr1G060640.15 | Barley | cytosol | 50.0 | 57.68 |
| VIT_12s0142g00670.t01 | Wine grape | plastid | 61.36 | 56.76 |
| EER97966 | Sorghum | mitochondrion | 55.03 | 56.31 |
| Os07t0143700-01 | Rice | plastid | 30.03 | 56.23 |
| Zm00001d018787_P001 | Maize | mitochondrion | 54.38 | 55.01 |
| Solyc07g044760.2.1 | Tomato | plastid | 56.01 | 54.76 |
| TraesCS2A01G253700.1 | Wheat | mitochondrion | 54.38 | 54.12 |
| Zm00001d031050_P002 | Maize | mitochondrion | 53.25 | 53.68 |
| EES17375 | Sorghum | mitochondrion | 53.73 | 53.56 |
| TraesCS2B01G273300.1 | Wheat | plastid | 53.73 | 53.47 |
| Zm00001d041480_P001 | Maize | mitochondrion | 51.95 | 53.42 |
| TraesCS2D01G254200.1 | Wheat | mitochondrion | 53.25 | 52.99 |
| TraesCS5B01G052100.1 | Wheat | mitochondrion | 51.14 | 52.76 |
| TraesCS5D01G057800.1 | Wheat | mitochondrion | 51.46 | 52.75 |
| GSMUA_Achr7P00980_001 | Banana | mitochondrion | 44.16 | 52.51 |
| TraesCS5A01G047300.2 | Wheat | mitochondrion | 52.27 | 52.27 |
| Os12t0611200-01 | Rice | nucleus | 52.92 | 51.91 |
| HORVU5Hr1G011460.3 | Barley | mitochondrion | 52.11 | 51.36 |
| Solyc12g006320.1.1 | Tomato | plastid | 53.41 | 51.17 |
| GSMUA_Achr2P13080_001 | Banana | plastid | 55.84 | 46.61 |
| AT5G26742.2 | Thale cress | plastid | 44.64 | 36.76 |
| GSMUA_Achr2P13070_001 | Banana | cytosol | 58.44 | 30.46 |
| AT5G62190.1 | Thale cress | nucleus | 31.82 | 29.21 |
| AT4G15850.1 | Thale cress | nucleus | 19.32 | 22.8 |
Protein Annotations
| MapMan:16.12.2.2.1.4 | Gene3D:3.40.50.300 | EntrezGene:821802 | ProteinID:AEE76622.1 | ArrayExpress:AT3G22330 | EnsemblPlantsGene:AT3G22330 |
| RefSeq:AT3G22330 | TAIR:AT3G22330 | RefSeq:AT3G22330-TAIR-G | EnsemblPlants:AT3G22330.1 | TAIR:AT3G22330.1 | EMBL:AY062502 |
| EMBL:AY093256 | Unigene:At.27322 | ProteinID:BAB01770.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0000373 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009409 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0010501 |
| GO:GO:0016787 | GO:GO:0030312 | GO:GO:0043234 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | RefSeq:NP_188872.2 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| Symbol:PMH2 | PO:PO:0000293 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF326 | UniProt:Q9LUW5 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI000009E961 | SEG:seg | : | : | : | : |
Description
RH53DEAD-box ATP-dependent RNA helicase 53, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW5]
Coordinates
chr3:+:7892508..7895499
Molecular Weight (calculated)
65363.3 Da
IEP (calculated)
9.729
GRAVY (calculated)
-0.315
Length
616 amino acids
Sequence
(BLAST)
(BLAST)
001: MITTVLRRSL LDASKRNLSA SLTSINTVLF HNLAPAATRV SDLALIGSSD VKAGFPFGVE AKGIHFQSGP LDFRASMVSQ AGFAISESSE RRVGDSESVG
101: GDGLAISELG ISPEIVKALS SKGIEKLFPI QKAVLEPAME GRDMIGRART GTGKTLAFGI PIIDKIIKYN AKHGRGRNPL CLVLAPTREL ARQVEKEFRE
201: SAPSLDTICL YGGTPIGQQM RQLDYGVDVA VGTPGRVIDL MKRGALNLSE VQFVVLDEAD QMLQVGFAED VEIILEKLPE KRQSMMFSAT MPSWIRSLTK
301: KYLNNPLTVD LVGDSDQKLA DGITTYSIIA DSYGRASIIG PLVTEHAKGG KCIVFTQTKR DADRLSYALA RSFKCEALHG DISQSQRERT LAGFRDGHFN
401: ILVATDVAAR GLDVPNVDLI IHYELPNNTE TFVHRTGRTG RAGKKGSAIL IYSQDQSRAV KIIEREVGSR FTELPSIAVE RGSASMFEGI GSRSGGSFGG
501: GMRDRGSSFG GRSGGGGYGG SSGGYGGGRS GGSSNRYSGD SDRSGFGSFG MRSPEGYGSD RSSQSGGRSS FGGGRSGGSS NNRSSGFGDF GSDRSSQSGG
601: RSSFGGFGSN DGKRSY
101: GDGLAISELG ISPEIVKALS SKGIEKLFPI QKAVLEPAME GRDMIGRART GTGKTLAFGI PIIDKIIKYN AKHGRGRNPL CLVLAPTREL ARQVEKEFRE
201: SAPSLDTICL YGGTPIGQQM RQLDYGVDVA VGTPGRVIDL MKRGALNLSE VQFVVLDEAD QMLQVGFAED VEIILEKLPE KRQSMMFSAT MPSWIRSLTK
301: KYLNNPLTVD LVGDSDQKLA DGITTYSIIA DSYGRASIIG PLVTEHAKGG KCIVFTQTKR DADRLSYALA RSFKCEALHG DISQSQRERT LAGFRDGHFN
401: ILVATDVAAR GLDVPNVDLI IHYELPNNTE TFVHRTGRTG RAGKKGSAIL IYSQDQSRAV KIIEREVGSR FTELPSIAVE RGSASMFEGI GSRSGGSFGG
501: GMRDRGSSFG GRSGGGGYGG SSGGYGGGRS GGSSNRYSGD SDRSGFGSFG MRSPEGYGSD RSSQSGGRSS FGGGRSGGSS NNRSSGFGDF GSDRSSQSGG
601: RSSFGGFGSN DGKRSY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.