Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029275.1-P | Field mustard | nucleus | 77.65 | 79.06 |
| CDX87236 | Canola | nucleus | 74.81 | 78.81 |
| CDY16789 | Canola | nucleus | 74.37 | 78.58 |
| Bra035903.1-P | Field mustard | nucleus | 73.62 | 78.04 |
| CDY28363 | Canola | plastid | 27.42 | 67.15 |
| GSMUA_Achr7P05930_001 | Banana | nucleus | 58.42 | 64.58 |
| VIT_16s0022g02110.t01 | Wine grape | plastid | 65.13 | 62.97 |
| PGSC0003DMT400079640 | Potato | nucleus | 62.44 | 62.17 |
| KRG91400 | Soybean | nucleus | 63.93 | 61.9 |
| KRH35418 | Soybean | endoplasmic reticulum | 64.08 | 61.69 |
| Solyc03g007010.2.1 | Tomato | nucleus | 62.59 | 61.58 |
| PGSC0003DMT400071859 | Potato | cytosol, nucleus, plastid | 61.25 | 61.44 |
| HORVU5Hr1G080170.2 | Barley | nucleus | 59.31 | 61.42 |
| Solyc06g035450.2.1 | Tomato | nucleus | 35.32 | 59.1 |
| TraesCS5B01G309500.1 | Wheat | nucleus | 60.36 | 57.86 |
| TraesCS5D01G315900.1 | Wheat | mitochondrion, nucleus | 60.36 | 57.86 |
| TraesCS5A01G308900.1 | Wheat | nucleus | 60.21 | 57.8 |
| GSMUA_Achr4P19590_001 | Banana | nucleus | 61.55 | 57.36 |
| Zm00001d015590_P001 | Maize | endoplasmic reticulum, golgi | 21.31 | 57.2 |
| Zm00001d006160_P001 | Maize | nucleus | 59.76 | 56.96 |
| Os09t0520700-01 | Rice | nucleus, plastid | 59.02 | 56.9 |
| EER97062 | Sorghum | nucleus | 59.61 | 56.26 |
| Zm00001d021196_P004 | Maize | nucleus | 59.17 | 56.15 |
| Zm00001d035226_P001 | Maize | plasma membrane | 19.67 | 37.93 |
| CDY34116 | Canola | cytosol | 28.46 | 37.45 |
| Zm00001d049075_P001 | Maize | extracellular, golgi | 25.78 | 35.74 |
| Zm00001d035797_P001 | Maize | mitochondrion | 29.66 | 34.91 |
| Zm00001d050438_P002 | Maize | extracellular | 16.54 | 34.47 |
| Zm00001d049254_P001 | Maize | cytosol | 9.24 | 32.46 |
| Zm00001d046048_P001 | Maize | cytosol | 8.94 | 31.91 |
| AT3G22330.1 | Thale cress | mitochondrion | 29.21 | 31.82 |
| AT3G22310.1 | Thale cress | mitochondrion | 28.61 | 31.48 |
| Zm00001d024138_P001 | Maize | plastid | 12.97 | 30.85 |
| AT5G26742.2 | Thale cress | plastid | 33.83 | 30.35 |
| CDY44622 | Canola | cytosol | 29.66 | 23.03 |
| AT4G15850.1 | Thale cress | nucleus | 16.39 | 21.07 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:836340 | ProteinID:AED97579.1 | ArrayExpress:AT5G62190 | EnsemblPlantsGene:AT5G62190 |
| RefSeq:AT5G62190 | TAIR:AT5G62190 | RefSeq:AT5G62190-TAIR-G | EnsemblPlants:AT5G62190.1 | TAIR:AT5G62190.1 | EMBL:AY039576 |
| EMBL:AY056137 | Unigene:At.22598 | ProteinID:BAA97183.1 | EMBL:BT008581 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004004 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010501 | GO:GO:0016070 | GO:GO:0016787 | GO:GO:0017151 |
| InterPro:GUCT | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 |
| RefSeq:NP_201025.1 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF08152 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | Symbol:PRH75 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF327 | UniProt:Q39189 | InterPro:RBD_domain_sf | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif |
| SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | SUPFAM:SSF54928 | UniParc:UPI000009CABD | EMBL:X99938 |
| SEG:seg | : | : | : | : | : |
Description
RH7DEAD-box ATP-dependent RNA helicase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39189]
Coordinates
chr5:-:24980268..24984044
Molecular Weight (calculated)
72894.9 Da
IEP (calculated)
9.852
GRAVY (calculated)
-0.409
Length
671 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.