Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033519.1-P | Field mustard | cytosol | 82.76 | 81.36 |
| CDY22890 | Canola | cytosol | 82.76 | 81.36 |
| CDY44172 | Canola | cytosol | 82.38 | 80.98 |
| VIT_10s0003g04000.t01 | Wine grape | nucleus | 66.28 | 67.05 |
| Solyc07g005890.2.1 | Tomato | nucleus | 63.6 | 64.72 |
| GSMUA_Achr10P... | Banana | cytosol | 62.64 | 63.87 |
| PGSC0003DMT400059139 | Potato | cytosol | 62.64 | 63.74 |
| TraesCS3A01G243600.1 | Wheat | cytosol | 25.86 | 61.93 |
| KRH42587 | Soybean | nucleus | 33.52 | 57.0 |
| EES07679 | Sorghum | nucleus | 55.75 | 56.07 |
| Os02t0795900-01 | Rice | nucleus | 55.75 | 55.85 |
| KRH15843 | Soybean | cytosol | 40.42 | 55.67 |
| TraesCS6A01G358500.1 | Wheat | nucleus | 55.36 | 54.94 |
| TraesCS6B01G391200.1 | Wheat | nucleus | 55.17 | 54.75 |
| TraesCS6D01G341300.1 | Wheat | nucleus | 54.98 | 54.56 |
| Zm00001d018375_P001 | Maize | nucleus | 54.6 | 54.49 |
| KRH15837 | Soybean | nucleus | 18.77 | 52.41 |
| HORVU6Hr1G085490.2 | Barley | mitochondrion | 55.75 | 50.7 |
| TraesCS3D01G247800.1 | Wheat | nucleus | 42.72 | 48.58 |
| HORVU0Hr1G031660.1 | Barley | mitochondrion, nucleus | 13.41 | 46.98 |
| KRH15846 | Soybean | nucleus | 49.23 | 46.06 |
| KRH44787 | Soybean | nucleus | 53.26 | 45.06 |
| PGSC0003DMT400029130 | Potato | cytosol, nucleus, plasma membrane, plastid | 60.54 | 41.15 |
| Zm00001d052036_P001 | Maize | plastid | 14.94 | 37.14 |
| AT3G22330.1 | Thale cress | mitochondrion | 22.8 | 19.32 |
| AT3G22310.1 | Thale cress | mitochondrion | 22.41 | 19.18 |
| AT5G26742.2 | Thale cress | plastid | 26.82 | 18.72 |
| AT5G62190.1 | Thale cress | nucleus | 21.07 | 16.39 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:827266 | ProteinID:AEE83659.1 | ArrayExpress:AT4G15850 | EnsemblPlantsGene:AT4G15850 |
| RefSeq:AT4G15850 | TAIR:AT4G15850 | RefSeq:AT4G15850-TAIR-G | EnsemblPlants:AT4G15850.1 | TAIR:AT4G15850.1 | Symbol:ATRH1 |
| Unigene:At.33 | ProteinID:CAA72069.1 | ProteinID:CAB45993.1 | ProteinID:CAB78627.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0010501 | GO:GO:0016787 | GO:GO:0017151 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | RefSeq:NP_193320.6 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF68 | UniProt:Q7FGZ2 | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0001A7B0D2 |
| EMBL:Y11154 | SEG:seg | : | : | : | : |
Description
RH1DEAD-box ATP-dependent RNA helicase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7FGZ2]
Coordinates
chr4:+:9001174..9004734
Molecular Weight (calculated)
57719.0 Da
IEP (calculated)
9.419
GRAVY (calculated)
-0.204
Length
522 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRDKEDKTE MDSVVPWMRA PVDVSNVENC ALDTLPCLNP KLKKALENMG ISSLFPVQVA VWHETIGPGG FERDICVNSP TGSGKTLSYA LPIVQLLASR
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.