Factsheet for TraesCS3D01G247800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G341300.1	Wheat	nucleus	90.2	78.71
HORVU6Hr1G085490.2	Barley	mitochondrion	89.32	71.43
Os02t0795900-01	Rice	nucleus	78.21	68.91
EES07679	Sorghum	nucleus	77.56	68.59
GSMUA_Achr10P...	Banana	cytosol	57.3	51.37
PGSC0003DMT400059139	Potato	cytosol	55.12	49.32
Solyc07g005890.2.1	Tomato	nucleus	54.9	49.12
VIT_10s0003g04000.t01	Wine grape	nucleus	54.03	48.06
KRH15843	Soybean	cytosol	36.82	44.59
AT4G15850.1	Thale cress	nucleus	48.58	42.72
CDY44172	Canola	cytosol	49.24	42.56
Bra033519.1-P	Field mustard	cytosol	48.8	42.18
CDY22890	Canola	cytosol	48.8	42.18
KRH42587	Soybean	nucleus	24.4	36.48
Zm00001d052036_P001	Maize	plastid	15.69	34.29
KRH15837	Soybean	nucleus	13.07	32.09
KRH15846	Soybean	nucleus	38.13	31.36
KRH44787	Soybean	nucleus	42.05	31.28
PGSC0003DMT400029130	Potato	cytosol, nucleus, plasma membrane, plastid	49.89	29.82
TraesCS5D01G057800.1	Wheat	mitochondrion	19.83	15.14
TraesCS2D01G254200.1	Wheat	mitochondrion	18.95	14.05
TraesCS5D01G505700.2	Wheat	plastid	21.57	12.84
TraesCS5D01G315900.1	Wheat	mitochondrion, nucleus	17.65	11.57

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031
PANTHER:PTHR24031:SF68	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS3D01G247800	EnsemblPlants:TraesCS3D01G247800.1	TIGR:cd00079
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:346821113..346824447

Molecular Weight (calculated)

51585.7 Da

IEP (calculated)

8.817

GRAVY (calculated)

-0.288

Length

459 amino acids

Sequence
(BLAST)

001: MVTMKTKELE DGVPEERVPH LPWMRHPVDI DSFLGCPVMS LPRLDPSKVL ACFDCATYTG FSIAEVFDAI APVVGLAVAS AVGQSSIADE ISDLIKKSKQ
101: ELYPSLDDEY VEMEPQTKVD ILVATPGRLM DHIKMTKGFS LEHLQYLVVD ETDRMLREAY QSWLPTVIQF TLPTNQDHFQ DDTAGRTLLH PLTTIRRSGV
201: ERGFKGKCYP RLAKIVCSAT LTQDPSKLSQ LELHHPLLLN SGKKRYRIPT KLESYKLICT SNIKPLCLIV LLQELCGEKC LVFTKSVDDS HRLSTFLGFF
301: EELPFKFSKF SSLQRESTRR KTLAAFKEGK IDVLIGSDIM ARGIHIDGLK YVINYEMPQY VKTYIHRAGR TARAGESGSC FTFLRKNEVK KFDNMLKKAG
401: GSSCILRSLP EEPIESLRPL FEAALEKLNG SVEPEASKKS NKSGDKAPGS LKRKRSKQT

Best Arabidopsis Sequence Match ( AT4G15850.1 )
(BLAST)

001: MGRDKEDKTE MDSVVPWMRA PVDVSNVENC ALDTLPCLNP KLKKALENMG ISSLFPVQVA VWHETIGPGG FERDICVNSP TGSGKTLSYA LPIVQLLASR
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA

Arabidopsis Description

RH1DEAD-box ATP-dependent RNA helicase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7FGZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.