Factsheet for Solyc07g005890.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059139	Potato	cytosol	98.05	98.05
VIT_10s0003g04000.t01	Wine grape	nucleus	73.88	73.45
GSMUA_Achr10P...	Banana	cytosol	69.01	69.14
TraesCS3A01G243600.1	Wheat	cytosol	27.29	64.22
AT4G15850.1	Thale cress	nucleus	64.72	63.6
EES07679	Sorghum	nucleus	63.74	63.01
Os02t0795900-01	Rice	nucleus	63.74	62.76
CDY44172	Canola	cytosol	64.33	62.15
Bra033519.1-P	Field mustard	cytosol	63.94	61.77
CDY22890	Canola	cytosol	63.94	61.77
Zm00001d018375_P001	Maize	nucleus	62.96	61.76
TraesCS6B01G391200.1	Wheat	nucleus	61.79	60.27
TraesCS6A01G358500.1	Wheat	nucleus	61.79	60.27
TraesCS6D01G341300.1	Wheat	nucleus	61.4	59.89
PGSC0003DMT400029130	Potato	cytosol, nucleus, plasma membrane, plastid	89.28	59.64
KRH15843	Soybean	cytosol	43.47	58.84
KRH42587	Soybean	nucleus	34.5	57.65
HORVU6Hr1G085490.2	Barley	mitochondrion	61.79	55.23
TraesCS3D01G247800.1	Wheat	nucleus	49.12	54.9
KRH15837	Soybean	nucleus	19.88	54.55
HORVU0Hr1G031660.1	Barley	mitochondrion, nucleus	14.23	48.99
KRH15846	Soybean	nucleus	51.07	46.95
KRH44787	Soybean	nucleus	55.75	46.35
Zm00001d052036_P001	Maize	plastid	15.2	37.14
Solyc06g035450.2.1	Tomato	nucleus	17.15	21.95
Solyc12g006320.1.1	Tomato	plastid	23.78	18.97
Solyc07g044760.2.1	Tomato	plastid	22.61	18.41
Solyc08g042050.2.1	Tomato	plastid	25.54	17.56
Solyc03g007010.2.1	Tomato	nucleus	21.64	16.28

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	UniProt:K4CB60	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF68	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc07g005890.2	EnsemblPlants:Solyc07g005890.2.1	UniParc:UPI000276C1A9	SEG:seg	:

Description

DEAD-box ATP-dependent RNA helicase 1 [Source:Projected from Arabidopsis thaliana (AT4G15850) UniProtKB/Swiss-Prot;Acc:Q7FGZ2]

Coordinates

chr7:-:729035..737605

Molecular Weight (calculated)

57626.3 Da

IEP (calculated)

9.518

GRAVY (calculated)

-0.162

Length

513 amino acids

Sequence
(BLAST)

001: MEEEKGLKKE KKNIPVLPWM RNPVDITTFD QCSLDLLPFI DPRLVAALKN MSITSLFPVQ LAVWQETIGP GSFERDLCIN SPTGSGKTLA YALPIVQMLS
101: TRAVKCLRAL VVLPTRDLAL QVKEVFSALA PAVGLSVGLA VGQSSISDEI SELIKKPNVE YGICYDPEEF SYELQSAVDI LVATPGRLMD HINNTNGFTL
201: EHLSYLVVDE TDRLLREAYQ SWLPTVIQLT SSSVDGNFPS VANLLPCTYG SLKTIRRMGT ERGFKGKAYP RLAKMVLSAT LTQDPSKLAQ LDLHHPLLLT
301: TGERRYKLPE ELKSFKVLCQ SKLKPLYLVS LLQSLQGEKS IVFTSSVEST HRLCTLLKFF DNLQIEFKEY SRLQRQSVRS KTLRAFRSGQ VQVLISSDAM
401: TRGMDVEGVR NVINYDMPAY IKTFIHRAGR TARAGLSGCC FTLMHKDEVK RFKKMLQKAD CNSCPTYSAS SEVIESLRSV YTLALEKLRE NVESEKFKKS
501: KIRLKSSNVR KEK

Best Arabidopsis Sequence Match ( AT4G15850.1 )
(BLAST)

001: MGRDKEDKTE MDSVVPWMRA PVDVSNVENC ALDTLPCLNP KLKKALENMG ISSLFPVQVA VWHETIGPGG FERDICVNSP TGSGKTLSYA LPIVQLLASR
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA

Arabidopsis Description

RH1DEAD-box ATP-dependent RNA helicase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7FGZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.