Factsheet for HORVU6Hr1G085490.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G358500.1	Wheat	nucleus	88.68	96.77
TraesCS6D01G341300.1	Wheat	nucleus	88.5	96.58
TraesCS6B01G391200.1	Wheat	nucleus	88.33	96.39
TraesCS3D01G247800.1	Wheat	nucleus	71.43	89.32
Os02t0795900-01	Rice	nucleus	75.61	83.3
EES07679	Sorghum	nucleus	74.91	82.85
GSMUA_Achr10P...	Banana	cytosol	58.71	65.82
Solyc07g005890.2.1	Tomato	nucleus	55.23	61.79
PGSC0003DMT400059139	Potato	cytosol	55.05	61.6
VIT_10s0003g04000.t01	Wine grape	nucleus	55.23	61.43
HORVU0Hr1G031660.1	Barley	mitochondrion, nucleus	14.81	57.05
AT4G15850.1	Thale cress	nucleus	50.7	55.75
CDY44172	Canola	cytosol	51.05	55.18
CDY22890	Canola	cytosol	50.87	54.99
Bra033519.1-P	Field mustard	cytosol	50.87	54.99
KRH42587	Soybean	nucleus	28.75	53.75
KRH15843	Soybean	cytosol	35.19	53.3
KRH15837	Soybean	nucleus	16.72	51.34
KRH15846	Soybean	nucleus	42.16	43.37
Zm00001d052036_P001	Maize	plastid	15.85	43.33
KRH44787	Soybean	nucleus	45.64	42.46
PGSC0003DMT400029130	Potato	cytosol, nucleus, plasma membrane, plastid	52.96	39.58
HORVU2Hr1G060640.15	Barley	cytosol	17.42	18.73
HORVU5Hr1G011460.3	Barley	mitochondrion	19.86	18.24
HORVU5Hr1G080170.2	Barley	nucleus	19.34	17.13

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A287V0S8	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:HORVU6Hr1G085490	EnsemblPlants:HORVU6Hr1G085490.2	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF68	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI000B464D8F	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:558896518..558900614

Molecular Weight (calculated)

64386.3 Da

IEP (calculated)

9.761

GRAVY (calculated)

-0.312

Length

574 amino acids

Sequence
(BLAST)

001: VRGTARHHQQ HKIPLRALTS PPLPSLPPPA PLLLAGGDSS PVYLVRRQMV TMGTKEQEDE APEERVPHLP WMRHPVDIDS FSACPVASLP RLDPRLAEAL
101: QRMGIESFFP VQVSAWLETI GPGAFQRDIC INSPTGSGKT LAYALPIVQM LSTRKVRCLR ALVVLPTRDL ALQVKEVFDA IAPVVGLTVA SAVGQSSIAD
201: EISDLIKKSK QELYPSLDDE YVEMEPQTKV DILVATPGRL MDHINMTKGF SLEHLQYLVV DETDRMLREA YQSWLPTVIQ FTRPTKQDLF RHDTTGRTLL
301: HPLTTIRRSG VERGFKGKCY PRLAKIVCSA TLTQDPSKLS QLELHHPLLL NSGKKRYRIP EKLESYKLIC TSNIKPLCLI VLLQELRGEK CLVFTKSVDD
401: SHRLSTLLGF FEDLPFKFSE FSSLQRESTR RKTLAAFKEG EIDVLIGSDI MARGIHINGL RYVINYEMPQ YVKTYIHRAG RTARAGESGS CFTFLRKNEV
501: KRFDKLLKKA DGSSCILRSL PEESIESLRP VFETALEKLK DKLKGSAEPE ASKKSNNSGD KAPGALKRKR GKQT

Best Arabidopsis Sequence Match ( AT4G15850.1 )
(BLAST)

001: MGRDKEDKTE MDSVVPWMRA PVDVSNVENC ALDTLPCLNP KLKKALENMG ISSLFPVQVA VWHETIGPGG FERDICVNSP TGSGKTLSYA LPIVQLLASR
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA

Arabidopsis Description

RH1DEAD-box ATP-dependent RNA helicase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7FGZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.