Factsheet for HORVU0Hr1G031660.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, mitochondrion

Predictor Summary:

mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G243600.1	Wheat	cytosol	48.99	33.49
KRH15837	Soybean	nucleus	25.5	20.32
KRH42587	Soybean	nucleus	38.93	18.89
Os02t0795900-01	Rice	nucleus	57.72	16.51
EES07679	Sorghum	nucleus	55.7	15.99
GSMUA_Achr10P...	Banana	cytosol	53.02	15.43
HORVU6Hr1G085490.2	Barley	mitochondrion	57.05	14.81
PGSC0003DMT400059139	Potato	cytosol	48.99	14.23
Solyc07g005890.2.1	Tomato	nucleus	48.99	14.23
VIT_10s0003g04000.t01	Wine grape	nucleus	48.32	13.95
AT4G15850.1	Thale cress	nucleus	46.98	13.41
CDY44172	Canola	cytosol	46.31	12.99
CDY22890	Canola	cytosol	46.31	12.99
Bra033519.1-P	Field mustard	cytosol	46.31	12.99
KRH15846	Soybean	nucleus	44.3	11.83
KRH44787	Soybean	nucleus	46.98	11.35
Zm00001d052036_P001	Maize	plastid	14.09	10.0
KRH15843	Soybean	cytosol	24.83	9.76
PGSC0003DMT400029130	Potato	cytosol, nucleus, plasma membrane, plastid	46.98	9.11
HORVU5Hr1G080170.2	Barley	nucleus	22.15	5.09
HORVU5Hr1G011460.3	Barley	mitochondrion	20.81	4.96
HORVU2Hr1G060640.15	Barley	cytosol	16.11	4.49

Protein Annotations

EnsemblPlants:HORVU0Hr1G031660.1	EnsemblPlantsGene:HORVU0Hr1G031660	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:P-loop_NTPase	PANTHER:PTHR24031	PANTHER:PTHR24031:SF68
PFAM:PF00270	SEG:seg	SUPFAM:SSF52540	UniParc:UPI000B4652EF	UniProt:A0A287EAG3	MapMan:35.1

Description

No Description!

Coordinates

chrchrUn:+:188107031..188107995

Molecular Weight (calculated)

16504.3 Da

IEP (calculated)

11.839

GRAVY (calculated)

-0.079

Length

149 amino acids

Sequence
(BLAST)

001: GDRGYEGAGG RGARGVRAAP AMDAAPRRHR LLLRLPRRMS PPPRPQISRV LQRMGIQSFF PVQVSAWLET IGPGAFHRDI CINSPTGSGK TLAYALPIVQ
101: MLSTRKVSCL RALVVPPTRD LALELFEQFI HRNSCMLHIV NSYFSNLSI

Best Arabidopsis Sequence Match ( AT4G15850.1 )
(BLAST)

001: MGRDKEDKTE MDSVVPWMRA PVDVSNVENC ALDTLPCLNP KLKKALENMG ISSLFPVQVA VWHETIGPGG FERDICVNSP TGSGKTLSYA LPIVQLLASR
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA

Arabidopsis Description

RH1DEAD-box ATP-dependent RNA helicase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7FGZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.