CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44787	Soybean	nucleus	95.7	86.55
KRH42587	Soybean	nucleus	47.31	85.99
KRH15837	Soybean	nucleus	27.96	83.42
KRH15843	Soybean	cytosol	54.84	80.74
TraesCS3A01G243600.1	Wheat	cytosol	20.97	53.67
VIT_10s0003g04000.t01	Wine grape	nucleus	49.28	53.29
Solyc07g005890.2.1	Tomato	nucleus	46.95	51.07
PGSC0003DMT400059139	Potato	cytosol	46.77	50.88
AT4G15850.1	Thale cress	nucleus	46.06	49.23
GSMUA_Achr10P...	Banana	cytosol	44.8	48.83
CDY44172	Canola	cytosol	45.7	48.02
Bra033519.1-P	Field mustard	cytosol	45.34	47.65
CDY22890	Canola	cytosol	45.34	47.65
Os02t0795900-01	Rice	nucleus	41.94	44.91
TraesCS6A01G358500.1	Wheat	nucleus	42.11	44.68
EES07679	Sorghum	nucleus	41.4	44.51
TraesCS6B01G391200.1	Wheat	nucleus	41.94	44.49
Zm00001d018375_P001	Maize	nucleus	41.58	44.36
TraesCS6D01G341300.1	Wheat	nucleus	41.76	44.3
HORVU0Hr1G031660.1	Barley	mitochondrion, nucleus	11.83	44.3
HORVU6Hr1G085490.2	Barley	mitochondrion	43.37	42.16
TraesCS3D01G247800.1	Wheat	nucleus	31.36	38.13
PGSC0003DMT400029130	Potato	cytosol, nucleus, plasma membrane, plastid	49.1	35.68
Zm00001d052036_P001	Maize	plastid	11.29	30.0
KRH14557	Soybean	mitochondrion	13.62	23.53
KRH73571	Soybean	nucleus	21.15	19.83
KRH45952	Soybean	mitochondrion	20.61	19.01
KRG99044	Soybean	mitochondrion	20.61	17.88
KRH33703	Soybean	plastid	20.97	15.9
KRG90413	Soybean	plastid	20.79	15.76
KRG96641	Soybean	nucleus	21.33	15.43
KRH68372	Soybean	nucleus	21.15	15.3
KRG91400	Soybean	nucleus	18.46	14.86
KRH14556	Soybean	cytosol	7.53	14.63
KRH35418	Soybean	endoplasmic reticulum	18.1	14.49

Protein Annotations

Gene3D:1.10.150.840	EntrezGene:102664148	Gene3D:3.30.70.330	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02008664
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_14G115100	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787
GO:GO:0046872	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR001650
InterPro:IPR012677	InterPro:IPR014001	UniProt:K7M6B0	EnsemblPlants:KRH15846	ProteinID:KRH15846	ProteinID:KRH15846.1
InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:P-loop_NTPase	PFAM:PF00076	PFAM:PF00270	PFAM:PF00271	PFAM:PF00642
ScanProsite:PS00039	PFscan:PS50102	PFscan:PS50103	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031
PANTHER:PTHR24031:SF68	InterPro:RBD_domain_sf	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RRM_dom	SMART:SM00356	SMART:SM00360
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	SUPFAM:SSF54928	SUPFAM:SSF90229	UniParc:UPI000295DE6E
InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr14:+:13676566..13685406

Molecular Weight (calculated)

62574.0 Da

IEP (calculated)

9.185

GRAVY (calculated)

-0.228

Length

558 amino acids

Sequence
(BLAST)

001: MNPLTLVKRT QNINAREAAL GIGDQASWHT KYKDSAYVFV GGIPFNLTEG DLLAVFAKYG EVVDVNLVRD KGTGKSKGFA FLAYEDQRST NLAVDNLNGA
101: QVLGRIIRVD HVDKYKKKEE EDKETEQQKR EARGVCRAFQ RGECTQGASC KFSHDEQACL IHTLAVLPWM RHPVDITRCQ ELPVCSVPLM KRRLQSVLEE
201: NMGISKLFPV QVALWQETVG PGDFERDLCI NSPTGSGKTL AYALPIVQNL STDTGGRLRA LIVVPTRDLA LQVKCVFDTL ASPLGLRIGL AAGQSSLRHE
301: LSSLIYLPGE DDGPDPGFLS PLWFQSKVDI LVATPGRLVD HVNKLSLKHL RYLVVDEADR LLREDYQSWL PTVLKLTQSR LAKIVLSATL TRDPGRLAQL
401: NLHHPLFLSA GKMRYRLPEY LECYKLICER KVKPLYLVAL LKSLGEEKCI VFTRSVESTH HLCKLLNCFG DLKIGIKEFS GLKHQRVRSK TVGEFRRGEF
501: QVLVSSDAMT RGMDVEGVRN VINYDMPKYT KTYVHRAGRT ARAGQTGRCF TLMSKDEV

Best Arabidopsis Sequence Match ( AT4G15850.1 )
(BLAST)

001: MGRDKEDKTE MDSVVPWMRA PVDVSNVENC ALDTLPCLNP KLKKALENMG ISSLFPVQVA VWHETIGPGG FERDICVNSP TGSGKTLSYA LPIVQLLASR
101: PVRCLRALVV LPTRDLALQV KDVFDAIAPA VGLSVGSAVG QSSIAGEISQ LIKTPKLDAG ICYDPDDLSQ NLESAVDILV ATPGRLMDHI NNTKGFTLEH
201: LRYLVVDETD RLLREAYQSW LPTVLQLTQT SDDSLFPSFT PFVPSAFGSL QTVRRQSVER GFKGKPYPRL VKMVLSATLT QDPSKLIQLD LHHPLFMTTG
301: GSRYRLPEKL ECLRLICETG MKPVYLVALL KSWEGEKCII FTSSVETTRR LCKLLNFFGD PKIKAKEYSG GLNQSLRSKE LKAFRKGDIQ VLVASDALTR
401: GMDVKGVTNV INYDMPPFAK TFIHRAGRTA RAGQAGRCFT LLSNHEVRRF SKLLEKVGSD SCPIYPIPPT SLDSIRATYT PALEKLKELV ESEAPKKGRQ
501: AFRHNSRTGN SQTKLNKPRS EA

Arabidopsis Description

RH1DEAD-box ATP-dependent RNA helicase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7FGZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.