Factsheet for Zm00001d008884_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030797_P001	Maize	mitochondrion	97.09	80.29
Zm00001d048578_P001	Maize	cytosol	95.93	70.51
Os07t0143700-01	Rice	plastid	88.37	46.2
KRH14557	Soybean	mitochondrion	72.67	38.7
Zm00001d033226_P001	Maize	cytosol	26.16	36.0
Zm00001d032793_P001	Maize	cytosol	11.63	31.75
HORVU2Hr1G060640.15	Barley	cytosol	90.7	29.21
Zm00001d018787_P001	Maize	mitochondrion	97.09	27.42
EER97966	Sorghum	mitochondrion	94.77	27.08
Zm00001d015590_P001	Maize	endoplasmic reticulum, golgi	37.79	26.0
PGSC0003DMT400074131	Potato	plastid	75.0	25.9
TraesCS2B01G273300.1	Wheat	plastid	91.28	25.36
TraesCS2A01G253700.1	Wheat	mitochondrion	90.12	25.04
CDY37406	Canola	mitochondrion	73.84	24.9
TraesCS2D01G254200.1	Wheat	mitochondrion	89.53	24.88
CDY46329	Canola	mitochondrion	76.16	23.86
Zm00001d043739_P001	Maize	mitochondrion	26.16	21.63
KRH73571	Soybean	nucleus	73.84	21.34
CDY37408	Canola	mitochondrion	73.84	21.13
CDY10634	Canola	mitochondrion	73.84	21.1
Bra031349.1-P	Field mustard	mitochondrion	73.84	21.1
Bra023836.1-P	Field mustard	mitochondrion	75.58	21.07
Solyc07g044760.2.1	Tomato	plastid	76.74	20.95
AT3G22330.1	Thale cress	mitochondrion	74.42	20.78
AT3G22310.1	Thale cress	mitochondrion	72.67	20.49
Zm00001d031584_P001	Maize	cytosol	24.42	20.39
VIT_12s0142g00670.t01	Wine grape	plastid	78.49	20.27
Solyc12g006320.1.1	Tomato	plastid	75.0	20.06
KRH45952	Soybean	mitochondrion	69.77	19.83
Zm00001d031050_P002	Maize	mitochondrion	69.77	19.64
Zm00001d041480_P001	Maize	mitochondrion	68.02	19.53
KRG99044	Soybean	mitochondrion	70.93	18.97
Zm00001d012922_P003	Maize	plastid	61.05	14.09
Zm00001d034721_P002	Maize	plastid	61.05	13.85
Zm00001d035797_P001	Maize	mitochondrion	41.86	12.63
CDY46330	Canola	nucleus	20.93	12.33
Zm00001d021196_P004	Maize	nucleus	48.84	11.88
Zm00001d006160_P001	Maize	nucleus	48.26	11.79
Zm00001d052036_P001	Maize	plastid	13.95	11.43
Zm00001d018375_P001	Maize	nucleus	29.07	9.56
Zm00001d050438_P002	Maize	extracellular	16.86	9.01
Zm00001d049075_P001	Maize	extracellular, golgi	25.0	8.88
Zm00001d035226_P001	Maize	plasma membrane	11.63	5.75
Zm00001d024138_P001	Maize	plastid	8.72	5.32
KRH14556	Soybean	cytosol	1.16	0.7
Zm00001d046048_P001	Maize	cytosol	0.0	0.0
Zm00001d049254_P001	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6FGI8	ProteinID:AQK90962.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00270	PFscan:PS51192
PANTHER:PTHR24031	PANTHER:PTHR24031:SF326	SMART:SM00487	SUPFAM:SSF52540	UniParc:UPI000844CDB1	EnsemblPlantsGene:Zm00001d008884
EnsemblPlants:Zm00001d008884_P001	EnsemblPlants:Zm00001d008884_T001	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 53

Coordinates

chr8:-:23825393..23826085

Molecular Weight (calculated)

19213.8 Da

IEP (calculated)

6.922

GRAVY (calculated)

0.045

Length

172 amino acids

Sequence
(BLAST)

001: MQGKDMIGRA RIGTGKTLAF GIPIMDKILS YNEKNGNPLA IILAPTRELA RQVEKEFRES APLDTLSVYG GVPINQQMRA LKYGVDIVVG TPGRVIDLLR
101: RGVLNLSQIQ FVVLDEADQM LAVGFDEDVE VIMEQLPQNR QSMLFSATMP SWIRKISNKY LKDPVIIDLL VL

Best Arabidopsis Sequence Match ( AT3G22310.1 )
(BLAST)

001: MISTVLRRSI LGTSRRTLAA SVTSINAALF HNLAPAAATV SDLANGATNV KSLPSNSSPF GVKVRDFHVK SVPSEFRSSI VSSAGFAAQE YAPSYENDGG
101: IGDSESVGSS GGGDGLAIAD LGISPEIVKA LKGRGIEKLF PIQKAVLEPA MEGRDMIGRA RTGTGKTLAF GIPIIDKIIK FNAKHGRGKN PQCLVLAPTR
201: ELARQVEKEF RESAPSLDTI CLYGGTPIGQ QMRELNYGID VAVGTPGRII DLMKRGALNL SEVQFVVLDE ADQMLQVGFA EDVEIILQKL PAKRQSMMFS
301: ATMPSWIRSL TKKYLNNPLT IDLVGDSDQK LADGITMYSI AADSYGRASI IGPLVKEHGK GGKCIVFTQT KRDADRLAFG LAKSYKCEAL HGDISQAQRE
401: RTLAGFRDGN FSILVATDVA ARGLDVPNVD LVIHYELPNN TETFVHRTGR TGRAGKKGSA ILIHGQDQTR AVKMIEKEVG SRFNELPSIA VERGSASMFE
501: GVGARSGGSF GGGRSGGGGY GSYGSSSGRS GGGSYGGYGG SSGRSGGGGG SYGGSGGSSS RYSGGSDRSS GFGSFGSGGS SGGFGSDRSS QSSGRSSFGG
601: FGSNDGKRSY

Arabidopsis Description

RH9DEAD-box ATP-dependent RNA helicase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUW6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.