Factsheet for Bra036582.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19766	Canola	plastid	97.98	95.66
Bra009900.1-P	Field mustard	plastid	94.08	93.45
Bra020533.1-P	Field mustard	plastid	92.73	93.23
AT5G26742.2	Thale cress	plastid	90.85	90.24
VIT_14s0060g00060.t01	Wine grape	plastid	74.29	72.25
GSMUA_Achr2P01980_001	Banana	nucleus	67.16	71.7
KRG96641	Soybean	nucleus	72.81	70.17
KRH68372	Soybean	nucleus	71.87	69.26
KRG90413	Soybean	plastid	68.37	69.02
KRH33703	Soybean	plastid	68.24	68.89
Solyc08g042050.2.1	Tomato	plastid	69.04	68.77
Os03t0827700-01	Rice	nucleus	66.76	68.6
GSMUA_Achr11P...	Banana	plastid	71.06	68.22
Zm00001d012922_P003	Maize	plastid	67.43	67.25
Zm00001d034721_P002	Maize	plastid	67.43	66.09
KXG37219	Sorghum	plastid	68.1	65.89
TraesCS4A01G367700.1	Wheat	nucleus	67.56	65.62
TraesCS5D01G505700.2	Wheat	plastid	67.7	65.24
TraesCS5B01G504900.1	Wheat	plastid	66.22	61.19
Bra023836.1-P	Field mustard	mitochondrion	36.47	43.92
Bra031349.1-P	Field mustard	mitochondrion	35.4	43.69
Bra035903.1-P	Field mustard	nucleus	30.42	35.7
Bra029275.1-P	Field mustard	nucleus	30.55	34.45
Bra033519.1-P	Field mustard	cytosol	18.57	25.99

Protein Annotations

MapMan:16.12.2.1.1.5	Gene3D:3.30.70.1800	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra036582	EnsemblPlants:Bra036582.1	EnsemblPlants:Bra036582.1-P
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0008270	GO:GO:0016787	InterPro:GUCT	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR001878	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4F673	InterPro:P-loop_NTPase
PFAM:PF00098	PFAM:PF00270	PFAM:PF00271	PFAM:PF08152	PFscan:PS50158	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF326	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00343
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	SUPFAM:SSF57756	UniParc:UPI0002541D08	InterPro:Znf_CCHC
InterPro:Znf_CCHC_sf	SEG:seg	:	:	:	:

Description

AT5G26742 (E=0.0) emb1138 | emb1138 (embryo defective 1138); ATP binding / ATP-dependent helicase/ RNA binding / helicase/ nucleic acid binding / zinc ion binding

Coordinates

chrA09:-:1850986..1855084

Molecular Weight (calculated)

80078.7 Da

IEP (calculated)

8.441

GRAVY (calculated)

-0.370

Length

743 amino acids

Sequence
(BLAST)

001: MASTVGVPSL YQVPHLETSK PTSKKRSTSL SLSLDNPFFS SPLSLRRTRL IHSSLLPPSA VATPNSVLSE EAFKSLGLSD EFDLEEGSSS EDDAEELAIS
101: KLRLPQRLGE SLEKRGITHL FPIQRAVLVP ALEGRDIIAR AKTGTGKTLA FGIPIIKRLT EQSGDYSAFR KSGRLPKFLV LAPTRELAKQ VEKEIKESAP
201: YLSTVCVYGG VSYTIQQSAL SRGVDVVVGT PGRIIDLIEG RSLKLGEVEY LVLDEADQML AVGFEEAVES ILENLPQKRQ SMLFSATMPT WVKKLARKSL
301: DNPLNIDLVG DQDEKLAEGI KLYAISATST SKRTILSDLI TVYAKGGKTI VFTQTKRDAD EVSLALSNSI ASEALHGDIS QHQRERTLNG FRQGKFTVLV
401: ATDVASRGLD IPNVDLVIHY ELPNDPETFV HRSGRTGRAG KEGSAILMHS SSQKRTARSL ERDVGCRFGF ISPPTGGDLL EASADQLVAT LNGVHPESIK
501: FFSATAQKLF EEKGTDALAA ALAHLSGFSQ PPSSRSLLSH EQGWVTLQLI RDPTNARGFL SARSVTGFLS DVYRPAADEV GKIFMIADER VQGAVFDLPE
601: DIAKELLEKE VPEGNSLSMI TKLPPLQDDG PSSDNYGRFS SRDRMPRGGG GSRGSRFGGR GGSSRGRDDD RRSRSSGGGG SSWSRDGGGS RGSSDGWLIG
701: GGSDRRPSSS SRGPSRERSF GGACFTCGSS GHRAADCPDK RGF

Best Arabidopsis Sequence Match ( AT5G26742.2 )
(BLAST)

001: MASTVGVPSL YQVPHLEISK PNSKKRSNCL SLSLDKPFFT PLSLVRRTRR IHSSSLLVPS AVATPNSVLS EEAFKSLGLS DHDEYDLDGD NNNVEADDGE
101: ELAISKLSLP QRLEESLEKR GITHLFPIQR AVLVPALQGR DIIARAKTGT GKTLAFGIPI IKRLTEEAGD YTAFRRSGRL PKFLVLAPTR ELAKQVEKEI
201: KESAPYLSTV CVYGGVSYTI QQSALTRGVD VVVGTPGRII DLIEGRSLKL GEVEYLVLDE ADQMLAVGFE EAVESILENL PTKRQSMLFS ATMPTWVKKL
301: ARKYLDNPLN IDLVGDQDEK LAEGIKLYAI ATTSTSKRTI LSDLITVYAK GGKTIVFTQT KRDADEVSLA LSNSIATEAL HGDISQHQRE RTLNAFRQGK
401: FTVLVATDVA SRGLDIPNVD LVIHYELPND PETFVHRSGR TGRAGKEGSA ILMHTSSQKR TVRSLERDVG CHFEFISPPT VGDLLESSAD QVVATLNGVH
501: PDSIKFFSAT AQKLYEEKGT DALAAALAHL SGFSQPPSSR SLLSHEKGWV TLQLIRDPTN ARGFLSARSV TGFLSDLYRT AADEVGKIFL IADDRIQGAV
601: FDLPEEIAKE LLEKDVPEGN SLSMITKLPP LQDDGPSSDN YGRFSSRDRM PRGGGGSRGS RGGRGGSSRG RDSWGGDDDR GSRRSSGGGS SWSRGGSSSR
701: GSSDDWLIGG RSSSSSRAPS RERSFGGSCF ICGKSGHRAT DCPDKRGF

Arabidopsis Description

RH3RH3 [Source:UniProtKB/TrEMBL;Acc:A0A178UT03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.