Factsheet for PGSC0003DMT400056014

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000674
PGSC0003DMT400009249
PGSC0003DMT400010908
PGSC0003DMT400032709
PGSC0003DMT400048580
PGSC0003DMT400060435
PGSC0003DMT400061471
PGSC0003DMT400063701
PGSC0003DMT400071859
PGSC0003DMT400079640
PGSC0003DMT400081835

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53720.1	PGSC0003DMT400063701	AT1G09140.1	16497658
AT1G53720.1	PGSC0003DMT400060435	AT2G37340.1	16497658
AT1G53720.1	PGSC0003DMT400061471	AT2G37340.1	16497658
AT1G53720.1	PGSC0003DMT400010908	AT3G13570.1	16497658
AT1G53720.1	PGSC0003DMT400081835	AT3G13570.1	16497658
AT1G53720.1	PGSC0003DMT400000674	AT3G61860.1	16497658
AT1G53720.1	PGSC0003DMT400048580	AT3G61860.1	16497658
AT1G53720.1	PGSC0003DMT400009249	AT4G35800.1	16497658
AT1G53720.1	PGSC0003DMT400071859	AT5G62190.1	16497658
AT1G53720.1	PGSC0003DMT400079640	AT5G62190.1	16497658
AT1G53720.1	PGSC0003DMT400032709	AT5G64200.2	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069100	Potato	cytosol	96.11	50.44
HORVU6Hr1G042040.1	Barley	endoplasmic reticulum	56.11	49.03
Solyc12g038150.1.1	Tomato	nucleus	44.44	48.48
HORVU1Hr1G040970.1	Barley	cytosol, endoplasmic reticulum, mitochondrion	61.67	46.06
HORVU1Hr1G015670.5	Barley	cytosol	60.56	45.04
PGSC0003DMT400011166	Potato	nucleus	66.11	40.75
PGSC0003DMT400011164	Potato	cytosol	34.44	33.51
PGSC0003DMT400022853	Potato	cytosol	28.89	31.71
PGSC0003DMT400038471	Potato	cytosol	26.67	30.0
AT1G53720.1	Thale cress	nucleus	73.89	26.28
Zm00001d036620_P001	Maize	nucleus	65.0	26.17
Bra030819.1-P	Field mustard	cytosol	74.44	24.63
TraesCS3D01G065600.1	Wheat	cytosol	44.44	23.95
Os06t0670400-00	Rice	cytosol	62.22	23.88
TraesCS4B01G241800.1	Wheat	nucleus	61.11	23.61
TraesCS3A01G064900.1	Wheat	cytosol	52.78	23.46
TraesCS4D01G241400.1	Wheat	nucleus	61.67	23.08
TraesCS4A01G064400.1	Wheat	nucleus	61.11	23.01
KRH13056	Soybean	nucleus	76.11	21.64
VIT_19s0027g01660.t01	Wine grape	nucleus	76.67	21.63
KRG93223	Soybean	nucleus	76.11	21.41
GSMUA_Achr10P...	Banana	cytosol	65.0	21.12
TraesCS7B01G371900.1	Wheat	nucleus	63.89	20.57
TraesCS7A01G469800.1	Wheat	nucleus	63.89	20.57
EER88795	Sorghum	cytosol	63.89	20.57
TraesCS7D01G457200.1	Wheat	nucleus	63.89	20.57
HORVU7Hr1G107520.5	Barley	nucleus	63.89	20.57
Os06t0670500-01	Rice	cytosol	64.44	20.57
CDY72459	Canola	cytosol, extracellular, plastid	9.44	14.53
CDY10512	Canola	nucleus	72.78	13.21
PGSC0003DMT400043897	Potato	cytoskeleton, cytosol, nucleus	13.33	12.44
PGSC0003DMT400055240	Potato	cytosol	28.33	8.56
PGSC0003DMT400072698	Potato	mitochondrion, plastid	10.56	8.26
PGSC0003DMT400009946	Potato	mitochondrion	10.0	7.63
PGSC0003DMT400019171	Potato	cytosol	25.56	7.41

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:CRIP	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000
UniProt:M1BYU5	PFAM:PF00160	EnsemblPlantsGene:PGSC0003DMG400021758	PGSC:PGSC0003DMG400021758	EnsemblPlants:PGSC0003DMT400056014	PIRSF:PIRSF001467
PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF156	SUPFAM:SSF50891	UniParc:UPI00029589E7	SEG:seg

Description

Multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase [Source:PGSC_GENE;Acc:PGSC0003DMG400021758]

Coordinates

chr12:-:41692942..41693484

Molecular Weight (calculated)

20343.5 Da

IEP (calculated)

4.585

GRAVY (calculated)

-0.819

Length

180 amino acids

Sequence
(BLAST)

001: MQTGDPTGTG FGGDSIYKFL YGDQAHFFGD EIHSDLKHSK RGTVAMASAG TGTGTGEKNL NASQFYITLR DDLDSLDGEH TVFGEITEGF YTLNRINKAY
101: VDDKGKPYQN IRIKHTYILY DRFDDPSQLA NLIPDASPER KPKDEIDDDV RLEDDWMPKD EELGIREEKE AHSRAVYLKV

Best Arabidopsis Sequence Match ( AT1G53720.2 )
(BLAST)

001: MSVLIVTSLG DIVIDLHSDK CPLTCKNFLK LCKIKYYNGC LFHTVQKDFT AQTGDPTGTG AGGDSIYKFL YGEQARFYKD EIHLDLKHSK TGTVAMASGG
101: ENLNASQFYF TLRDDLDYLD GKHTVFGQIA EGFDTLTRIN EAYVDPKNRP YKNIRIKHTH ILDDPFDDPP QLAEMMPDAS PEGKPKEEVK DDVRLEDDWV
201: PMDEELGAQE LEEVIREKAA HSSAVVLESI GDIPEAEVKP PDNVLFVCKL NPVTEDEDLH TIFSRFGTVV SADVIRDFKT GDSLCYAFIE FENKESCEQA
301: YFKMDNALID DRRIHVDFSQ SVSKLWSQFR QKDSQKGKGK SFFFSPPYGI SDLL

Arabidopsis Description

CYP59Peptidyl-prolyl cis-trans isomerase CYP59 [Source:UniProtKB/Swiss-Prot;Acc:Q6Q151]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.