Factsheet for PGSC0003DMT400061471

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010908
PGSC0003DMT400011164
PGSC0003DMT400011166
PGSC0003DMT400016115
PGSC0003DMT400029666
PGSC0003DMT400032709
PGSC0003DMT400037966
PGSC0003DMT400038558
PGSC0003DMT400055636
PGSC0003DMT400056014
PGSC0003DMT400067677
PGSC0003DMT400069100
PGSC0003DMT400075974
PGSC0003DMT400081835

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37340.1	PGSC0003DMT400029666	AT1G02840.1	18674533
AT2G37340.1	PGSC0003DMT400037966	AT1G02840.1	18674533
AT2G37340.1	PGSC0003DMT400011164	AT1G53720.1	16497658
AT2G37340.1	PGSC0003DMT400011166	AT1G53720.1	16497658
AT2G37340.1	PGSC0003DMT400056014	AT1G53720.1	16497658
AT2G37340.1	PGSC0003DMT400069100	AT1G53720.1	16497658
AT2G37340.1	PGSC0003DMT400055636	AT2G43370.1	15987817
AT2G37340.1	PGSC0003DMT400010908	AT3G13570.1	18674533
AT2G37340.1	PGSC0003DMT400081835	AT3G13570.1	18674533
AT2G37340.1	PGSC0003DMT400038558	AT3G50670.1	18674533
AT2G37340.1	PGSC0003DMT400067677	AT4G31580.1	18674533
AT2G37340.1	PGSC0003DMT400075974	AT4G31580.1	18674533
AT2G37340.1	PGSC0003DMT400016115	AT5G18810.1	18674533
AT2G37340.1	PGSC0003DMT400032709	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g005980.2.1	Tomato	nucleus	95.87	95.87
KRH67593	Soybean	endoplasmic reticulum	61.9	67.94
KRG95876	Soybean	nucleus	60.95	66.9
VIT_08s0040g02860.t01	Wine grape	nucleus	55.24	65.41
PGSC0003DMT400060435	Potato	nucleus	59.68	62.67
KRH67596	Soybean	nucleus	59.37	62.54
CDX80835	Canola	nucleus	51.75	61.51
CDX78183	Canola	nucleus	54.92	61.13
CDY11223	Canola	nucleus	50.79	60.84
CDX79732	Canola	nucleus	56.51	60.75
KRG95883	Soybean	nucleus	57.14	60.61
AT3G53500.2	Thale cress	mitochondrion, nucleus	54.6	60.56
CDX73550	Canola	nucleus	54.6	60.56
EES00292	Sorghum	nucleus	56.83	60.47
AT2G37340.1	Thale cress	nucleus	55.56	60.34
CDY07586	Canola	mitochondrion, nucleus	54.29	59.38
CDY52755	Canola	mitochondrion, nucleus	54.29	58.76
Bra003139.1-P	Field mustard	mitochondrion, nucleus	54.29	58.76
Bra005756.1-P	Field mustard	nucleus	42.86	58.7
Bra007004.1-P	Field mustard	nucleus	54.92	58.25
KXG21152	Sorghum	nucleus	57.46	58.01
GSMUA_Achr10P...	Banana	nucleus	59.68	57.85
Os05t0120100-01	Rice	mitochondrion, nucleus	59.05	57.59
Bra023114.1-P	Field mustard	nucleus	57.46	57.28
GSMUA_Achr6P15450_001	Banana	nucleus	60.95	56.97
Os01t0155600-01	Rice	nucleus	58.41	56.79
CDY46773	Canola	nucleus	56.83	56.65
Os03t0285900-01	Rice	nucleus	58.1	55.45
TraesCS1D01G111000.2	Wheat	nucleus	49.21	54.01
TraesCS1A01G108000.2	Wheat	nucleus	47.62	53.96
TraesCS3B01G151100.1	Wheat	nucleus	55.24	53.87
TraesCS3D01G134500.1	Wheat	nucleus	55.24	53.7
TraesCS1B01G065900.2	Wheat	nucleus	58.1	53.67
TraesCS1D01G051900.1	Wheat	nucleus	58.1	53.51
TraesCS1A01G049700.1	Wheat	nucleus	58.1	53.51
TraesCS1B01G130200.3	Wheat	nucleus	48.57	53.31
EES18924	Sorghum	nucleus	57.46	53.08
Zm00001d011004_P008	Maize	nucleus	56.51	52.66
HORVU1Hr1G024060.21	Barley	nucleus	49.84	52.51
TraesCS3A01G308000.1	Wheat	nucleus	55.24	52.25
Zm00001d011005_P005	Maize	nucleus	57.14	50.99
HORVU1Hr1G009950.7	Barley	nucleus, plastid	57.78	49.46
KRH42195	Soybean	endoplasmic reticulum	43.17	49.45
KXG21387	Sorghum	nucleus	41.59	49.43
Zm00001d035552_P001	Maize	endoplasmic reticulum, extracellular, golgi	57.14	48.52
Zm00001d037543_P001	Maize	nucleus	27.62	48.33
OQU77498	Sorghum	nucleus	15.56	44.14
KRH58317	Soybean	nucleus	29.84	42.92
Os05t0162600-01	Rice	nucleus	44.13	41.12
Zm00001d035551_P007	Maize	nucleus	40.32	32.4
PGSC0003DMT400029666	Potato	nucleus	28.57	28.57
KXG21391	Sorghum	nucleus	35.87	28.25
PGSC0003DMT400037966	Potato	cytosol, extracellular, nucleus	25.4	27.4
PGSC0003DMT400063701	Potato	nucleus	21.9	20.91
PGSC0003DMT400008347	Potato	cytosol	20.95	20.56

Protein Annotations

EntrezGene:102596635	MapMan:16.4.6.5	Gene3D:3.30.70.330	Gene3D:4.10.60.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677
UniProt:M1C7J2	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	EnsemblPlantsGene:PGSC0003DMG400023919	PGSC:PGSC0003DMG400023919
EnsemblPlants:PGSC0003DMT400061471	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF39	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI00029577BE
RefSeq:XP_006345685.1	RefSeq:XP_006345687.1	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:

Description

Arginine/serine-rich splicing factor [Source:PGSC_GENE;Acc:PGSC0003DMG400023919]

Coordinates

chr9:-:7144900..7151117

Molecular Weight (calculated)

35857.2 Da

IEP (calculated)

10.473

GRAVY (calculated)

-1.563

Length

315 amino acids

Sequence
(BLAST)

001: MPRYDDRMGN STRLYVGHLS SRTRSRDLER AFSKYGRVRD VDMKHDYAFV EFSDPRDADD ARYYLDGRDI DGRRIIVEFA KGVPRGPGGS REYLGKGPAP
101: GSGRCFNCGL EGHWARDCKA GDWKNKCYRC GERGHIERKC PNSPKKVSRR SYSRSPVRSK SRSRSRSPRR SYSRSRSYSQ SRSPPPKREQ VDQVKRSRSY
201: SRSPEPRKAS PSPPPKTRKR SPTPEEGSPM EAKSPPSPVR EEGAYSQSPR ERSVSPSSPR RDSPTPRKYD DDSPAEANGG SRSPSPKYRR NHADEDDEDE
301: GEFCNQRSGR ESQSP

Best Arabidopsis Sequence Match ( AT2G37340.1 )
(BLAST)

001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP

Arabidopsis Description

RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.