Factsheet for PGSC0003DMT400038558

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400029666
PGSC0003DMT400037966
PGSC0003DMT400060435
PGSC0003DMT400061471
PGSC0003DMT400063701
PGSC0003DMT400067677
PGSC0003DMT400075974

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50670.1	PGSC0003DMT400029666	AT1G02840.1	18674533
AT3G50670.1	PGSC0003DMT400037966	AT1G02840.1	18674533
AT3G50670.1	PGSC0003DMT400063701	AT1G09140.1	21798944
AT3G50670.1	PGSC0003DMT400060435	AT2G37340.1	18674533
AT3G50670.1	PGSC0003DMT400061471	AT2G37340.1	18674533
AT3G50670.1	PGSC0003DMT400067677	AT4G31580.1	10593939
AT3G50670.1	PGSC0003DMT400075974	AT4G31580.1	10593939
AT3G50670.1	PGSC0003DMT400067677	AT4G31580.1	9761791
AT3G50670.1	PGSC0003DMT400075974	AT4G31580.1	9761791

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g085420.2.1	Tomato	nucleus	88.84	88.28
VIT_04s0023g01580.t01	Wine grape	nucleus	53.26	71.07
GSMUA_Achr10P...	Banana	nucleus	56.21	68.46
Bra012098.1-P	Field mustard	cytosol	24.42	65.17
GSMUA_Achr7P08090_001	Banana	nucleus	56.0	64.25
TraesCS1B01G146600.1	Wheat	nucleus	47.79	63.41
CDY53849	Canola	nucleus, plastid	27.16	63.24
KRH76798	Soybean	nucleus	62.53	61.75
CDX81371	Canola	nucleus	54.53	61.52
KRH28659	Soybean	nucleus	62.32	61.41
CDY57127	Canola	plasma membrane	54.11	60.9
AT3G50670.1	Thale cress	nucleus	54.32	60.42
Os10t0115600-02	Rice	nucleus	52.84	54.21
HORVU1Hr1G046870.5	Barley	nucleus	54.11	53.43
TraesCS1A01G176500.1	Wheat	nucleus	53.89	53.22
TraesCS1D01G162500.1	Wheat	nucleus	53.68	53.01
TraesCS1B01G203600.1	Wheat	nucleus	53.47	52.81
EER95096	Sorghum	nucleus	53.68	52.69
GSMUA_Achr7P00820_001	Banana	cytosol	10.74	52.58
EER91800	Sorghum	nucleus	53.68	52.47
TraesCS1D01G124800.1	Wheat	nucleus	52.84	52.4
TraesCS1A01G128600.1	Wheat	nucleus	52.42	51.77
HORVU1Hr1G030660.5	Barley	nucleus	52.0	49.6
Zm00001d014343_P002	Maize	nucleus	54.53	46.09
KRH69931	Soybean	cytosol, mitochondrion, nucleus	17.68	43.08
CDY30756	Canola	nucleus, plastid	37.26	42.65
PGSC0003DMT400055636	Potato	nucleus	19.58	26.42

Protein Annotations

EntrezGene:102601882	MapMan:16.4.1.1.1	Gene3D:3.30.70.330	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030619	InterPro:IPR000504
InterPro:IPR012677	UniProt:M1B731	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF12220	EnsemblPlantsGene:PGSC0003DMG400014893
PGSC:PGSC0003DMG400014893	EnsemblPlants:PGSC0003DMT400038558	PFscan:PS50102	PANTHER:PTHR13952	PANTHER:PTHR13952:SF5	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	InterPro:U1snRNP70_N	UniParc:UPI000294C79D	RefSeq:XP_006340602.1
SEG:seg	InterPro:snRNP70_RRM	:	:	:	:

Description

U1 small nuclear ribonucleoprotein 70 kDa [Source:PGSC_GENE;Acc:PGSC0003DMG400014893]

Coordinates

chr2:+:40630617..40636882

Molecular Weight (calculated)

56401.4 Da

IEP (calculated)

9.055

GRAVY (calculated)

-1.838

Length

475 amino acids

Sequence
(BLAST)

001: MGDFNDAFMR NNPNVQARAK AQNRANVMQL KLIGQSHPTG LTANLLKLFE PRPPLEYKPP PEKRKCPSYT GMAQFVSNFA QPGDPEYAPP IPEVETPTER
101: RARIHKLRLE EGAKKAAEEL EKYDPSSDPN VTGDPYKTLF VARLNYETTE SRVKREFEAY GPIKRVRLVM DKTNNKPRGY AFIEFVHTRD MKAAYKQADG
201: KKIDNRRVLV DVERGRTVPN WRPRRLGGGL GTTRVGNEDA NREVVQPGRA ASRSEEPRAR DDRDSRDREK SRERVRDKDR EKSRERSHDR PRERERDDKH
301: HRERERTRER EKDRGRDRDR ERDRTRDRER GKDKDRDGHR ERDRHREKDR EKGKDEGEVD QGRERSRDRE YDYEHVESKH ERGRHGDKER NYDPAEPEDD
401: HGHYDYYDHH QGRGDYENPD AQGGDDRYKD ASRGHDRYDQ MEEDNYAYDH GASEAKERDQ DYKRSDRSHS REYDY

Best Arabidopsis Sequence Match ( AT3G50670.1 )
(BLAST)

001: MGDSGDPFLR NPNAAVQARA KVQNRANVLQ LKLMGQSHPT GLTNNLLKLF EPRPPLEYKP PPEKRKCPPY TGMAQFVSNF AEPGDPEYAP PKPEVELPSQ
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR

Arabidopsis Description

RNU1U1SNRNP [Source:UniProtKB/TrEMBL;Acc:A0A178VDW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.