CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72313
CDX79732
CDX95008
CDY13444
CDY46773
CDY47646
CDY59084
CDY66028

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50670.1	CDX95008	AT1G09140.1	21798944
AT3G50670.1	CDY66028	AT1G09140.1	21798944
AT3G50670.1	CDY47646	AT1G23860.1	10593939
AT3G50670.1	CDY59084	AT1G23860.1	10593939
AT3G50670.1	CDY47646	AT1G23860.1	9761791
AT3G50670.1	CDY59084	AT1G23860.1	9761791
AT3G50670.1	CDX79732	AT2G37340.1	18674533
AT3G50670.1	CDY46773	AT2G37340.1	18674533
AT3G50670.1	CDX72313	AT4G31580.1	10593939
AT3G50670.1	CDY13444	AT4G31580.1	10593939
AT3G50670.1	CDX72313	AT4G31580.1	9761791
AT3G50670.1	CDY13444	AT4G31580.1	9761791

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57127	Canola	plasma membrane	93.35	93.13
CDY53849	Canola	nucleus, plastid	37.29	76.96
VIT_04s0023g01580.t01	Wine grape	nucleus	59.14	69.94
AT3G50670.1	Thale cress	nucleus	70.55	69.56
GSMUA_Achr10P...	Banana	nucleus	57.72	62.31
TraesCS1B01G146600.1	Wheat	nucleus	51.07	60.06
GSMUA_Achr7P08090_001	Banana	nucleus	56.06	57.0
KRH76798	Soybean	nucleus	64.13	56.13
KRH28659	Soybean	nucleus	63.9	55.81
PGSC0003DMT400038558	Potato	nucleus	61.52	54.53
Solyc02g085420.2.1	Tomato	nucleus	61.28	53.97
CDY30756	Canola	nucleus, plastid	52.49	53.25
Os10t0115600-02	Rice	nucleus	55.82	50.76
HORVU1Hr1G046870.5	Barley	nucleus	54.63	47.82
TraesCS1D01G124800.1	Wheat	nucleus	54.39	47.81
EER95096	Sorghum	nucleus	54.87	47.73
TraesCS1A01G176500.1	Wheat	nucleus	54.39	47.61
EER91800	Sorghum	nucleus	54.87	47.53
GSMUA_Achr7P00820_001	Banana	cytosol	10.93	47.42
TraesCS1D01G162500.1	Wheat	nucleus	54.16	47.4
TraesCS1A01G128600.1	Wheat	nucleus	53.92	47.19
TraesCS1B01G203600.1	Wheat	nucleus	53.68	46.99
HORVU1Hr1G030660.5	Barley	nucleus	52.73	44.58
Zm00001d014343_P002	Maize	nucleus	55.34	41.46
KRH69931	Soybean	cytosol, mitochondrion, nucleus	15.68	33.85
CDY14697	Canola	cytosol, mitochondrion	11.4	26.52
CDX83484	Canola	nucleus	20.19	26.4
CDY23361	Canola	endoplasmic reticulum	15.68	25.88
CDY44222	Canola	nucleus	19.0	25.08
CDY22251	Canola	cytosol	8.79	24.03

Protein Annotations

MapMan:16.4.1.1.1	Gene3D:3.30.70.330	GO:A0A078CW71	EnsemblPlants:CDX81371	ProteinID:CDX81371	ProteinID:CDX81371.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0030619	EnsemblPlantsGene:GSBRNA2T00134932001
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF12220	PFscan:PS50102
PANTHER:PTHR13952	PANTHER:PTHR13952:SF5	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
InterPro:U1snRNP70_N	UniParc:UPI0004EECDB3	SEG:seg	InterPro:snRNP70_RRM	:	:

Description

BnaC09g07820D

Coordinates

chrLK031824:-:1289162..1292267

Molecular Weight (calculated)

49963.5 Da

IEP (calculated)

9.885

GRAVY (calculated)

-1.809

Length

421 amino acids

Sequence
(BLAST)

001: MGDMNDPFMR NQAVQARPKV QNRSNVLQLK LMGQSHPTGL TPNLLKLFEP RPPLEFLPPP EKRKCPPYTG MAQFVSHFAE PGDPKYAPPK PEVETPAQKR
101: ERIHKSRLEK GVEKAAEDLQ KYDPNNDPNA SGDPYKTLFV ARLNYETSES KIKREFEAYG PIKQVHLVTD QQTNKPKGYA FIEYLNTRDM KAAYKQGDGK
201: KIDGRRVLVD VERGRTVPNW RPRRLGGGLG TTRVTGEKIA GEEEQQQPSQ ARTSRSEEPK AREDREKSRD RGKEREREVS HERSRERSHE RSRERSRDRP
301: RESHREDKHH RDRDRGRDRD RDRESRRDRG DRDRRSRDHD RERSRKRDRD YESGEYEEEG EYERGGSKQR RGESEEGHGY YEGRRGDQDR YEDRYGRVEE
401: EEYRYDDREY KRSERSKSRD Y

Best Arabidopsis Sequence Match ( AT3G50670.1 )
(BLAST)

001: MGDSGDPFLR NPNAAVQARA KVQNRANVLQ LKLMGQSHPT GLTNNLLKLF EPRPPLEYKP PPEKRKCPPY TGMAQFVSNF AEPGDPEYAP PKPEVELPSQ
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR

Arabidopsis Description

RNU1U1SNRNP [Source:UniProtKB/TrEMBL;Acc:A0A178VDW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.