CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92904
KRG95876
KRG95883
KRG96443
KRG99320
KRH04931
KRH16160
KRH42195
KRH45698
KRH58317
KRH67593
KRH67596
KRH68188

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50670.1	KRG96443	AT1G02840.1	18674533
AT3G50670.1	KRH68188	AT1G02840.1	18674533
AT3G50670.1	KRG92904	AT1G09140.1	21798944
AT3G50670.1	KRG99320	AT1G23860.1	10593939
AT3G50670.1	KRH45698	AT1G23860.1	10593939
AT3G50670.1	KRG99320	AT1G23860.1	9761791
AT3G50670.1	KRH45698	AT1G23860.1	9761791
AT3G50670.1	KRG95876	AT2G37340.1	18674533
AT3G50670.1	KRG95883	AT2G37340.1	18674533
AT3G50670.1	KRH42195	AT2G37340.1	18674533
AT3G50670.1	KRH58317	AT2G37340.1	18674533
AT3G50670.1	KRH67593	AT2G37340.1	18674533
AT3G50670.1	KRH67596	AT2G37340.1	18674533
AT3G50670.1	KRH04931	AT4G31580.1	10593939
AT3G50670.1	KRH16160	AT4G31580.1	10593939
AT3G50670.1	KRH04931	AT4G31580.1	9761791
AT3G50670.1	KRH16160	AT4G31580.1	9761791

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28659	Soybean	nucleus	93.35	93.15
VIT_04s0023g01580.t01	Wine grape	nucleus	58.21	78.65
GSMUA_Achr10P...	Banana	nucleus	56.13	69.23
CDY53849	Canola	nucleus, plastid	28.48	67.16
Bra012098.1-P	Field mustard	cytosol	24.53	66.29
GSMUA_Achr7P08090_001	Banana	nucleus	55.93	64.98
TraesCS1B01G146600.1	Wheat	nucleus	48.23	64.8
CDX81371	Canola	nucleus	56.13	64.13
GSMUA_Achr7P00820_001	Banana	cytosol	12.89	63.92
CDY57127	Canola	plasma membrane	55.93	63.74
AT3G50670.1	Thale cress	nucleus	56.13	63.23
PGSC0003DMT400038558	Potato	nucleus	61.75	62.53
Solyc02g085420.2.1	Tomato	nucleus	61.75	62.13
KRH69931	Soybean	cytosol, mitochondrion, nucleus	24.32	60.0
TraesCS1A01G176500.1	Wheat	nucleus	56.55	56.55
Os10t0115600-02	Rice	nucleus	54.26	56.37
TraesCS1D01G162500.1	Wheat	nucleus	56.34	56.34
HORVU1Hr1G046870.5	Barley	nucleus	55.93	55.93
TraesCS1B01G203600.1	Wheat	nucleus	55.93	55.93
TraesCS1D01G124800.1	Wheat	nucleus	52.81	53.03
EER95096	Sorghum	nucleus	52.81	52.48
TraesCS1A01G128600.1	Wheat	nucleus	52.18	52.18
EER91800	Sorghum	nucleus	52.6	52.06
HORVU1Hr1G030660.5	Barley	nucleus	51.77	50.0
Zm00001d014343_P002	Maize	nucleus	53.43	45.73
CDY30756	Canola	nucleus, plastid	35.76	41.45
KRH46935	Soybean	nucleus	19.75	29.05
KRH01744	Soybean	nucleus	20.17	27.95

Protein Annotations

EntrezGene:100800903	MapMan:16.4.1.1.1	Gene3D:3.30.70.330	EMBL:ACUP02000642	EnsemblPlantsGene:GLYMA_01G175100	GO:GO:0000243
GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005685	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030619	GO:GO:0071004	GO:GO:0071011
UniProt:I1J8V4	InterPro:IPR000504	InterPro:IPR012677	EnsemblPlants:KRH76798	ProteinID:KRH76798	ProteinID:KRH76798.1
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF12220	PFscan:PS50102	PANTHER:PTHR13952	PANTHER:PTHR13952:SF5
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	InterPro:U1snRNP70_N	UniParc:UPI0002336DBC
SEG:seg	InterPro:snRNP70_RRM	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:51161998..51166966

Molecular Weight (calculated)

57391.2 Da

IEP (calculated)

9.240

GRAVY (calculated)

-1.871

Length

481 amino acids

Sequence
(BLAST)

001: MGDNNSNNDA FMRNQNAAVQ ARTKAQNRSN VLQLKLIGQS HPTGLTANLL KLFEPRPPLE YKPPPEKRKC PPLSGMAQFV SKFAQPGDPE YAPPVPETET
101: PAQKRARIHK LRLEKGAAKA AEELEKYDPH NDPNVSGDPY KTLFVAKLSY ETTESRIKRE FESYGPIKRV RLVADKDTNK PRGYAFIEYL HTRDMKAAYK
201: QADGRKIDGR RVLVDVERGR TVPNWRPRRL GGGLGTTRVG GEEVNQRHSG REQQQSRSEE PRVREDRHSD RDREISRERV RDKDKERERS REHSNERVRD
301: RDQREDRHHR DRDRTRDRDR ERDRDRDRGR DRDRARDRER GRDRDRDREY DRHRERDRDY EVGETDRGRS RDRESHYNRV ESKHGERNHD YEPEDDRGRQ
401: NQYEHGHRHA DPDHDTTEHY DPYNHGDDRG DHYNQYPDPD RMEDDYHAGR ATSESHEKER SHDVDREYRR SERSHSREYD Y

Best Arabidopsis Sequence Match ( AT3G50670.1 )
(BLAST)

001: MGDSGDPFLR NPNAAVQARA KVQNRANVLQ LKLMGQSHPT GLTNNLLKLF EPRPPLEYKP PPEKRKCPPY TGMAQFVSNF AEPGDPEYAP PKPEVELPSQ
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR

Arabidopsis Description

RNU1U1SNRNP [Source:UniProtKB/TrEMBL;Acc:A0A178VDW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.