Factsheet for HORVU1Hr1G046870.5

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G009950.7
HORVU1Hr1G024060.21
HORVU2Hr1G019410.4
HORVU3Hr1G064550.7
HORVU4Hr1G046940.7
HORVU6Hr1G083840.4
HORVU7Hr1G031320.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50670.1	HORVU2Hr1G019410.4	AT1G02840.1	18674533
AT3G50670.1	HORVU3Hr1G064550.7	AT1G02840.1	18674533
AT3G50670.1	HORVU4Hr1G046940.7	AT1G02840.1	18674533
AT3G50670.1	HORVU2Hr1G019410.4	AT1G09140.1	21798944
AT3G50670.1	HORVU3Hr1G064550.7	AT1G09140.1	21798944
AT3G50670.1	HORVU4Hr1G046940.7	AT1G09140.1	21798944
AT3G50670.1	HORVU1Hr1G009950.7	AT2G37340.1	18674533
AT3G50670.1	HORVU1Hr1G024060.21	AT2G37340.1	18674533
AT3G50670.1	HORVU6Hr1G083840.4	AT4G31580.1	10593939
AT3G50670.1	HORVU7Hr1G031320.1	AT4G31580.1	10593939
AT3G50670.1	HORVU6Hr1G083840.4	AT4G31580.1	9761791
AT3G50670.1	HORVU7Hr1G031320.1	AT4G31580.1	9761791

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G162500.1	Wheat	nucleus	97.71	97.71
TraesCS1A01G176500.1	Wheat	nucleus	97.3	97.3
TraesCS1B01G203600.1	Wheat	nucleus	97.09	97.09
VIT_04s0023g01580.t01	Wine grape	nucleus	51.35	69.38
GSMUA_Achr10P...	Banana	nucleus	54.89	67.69
HORVU1Hr1G030660.5	Barley	nucleus	68.61	66.27
GSMUA_Achr7P08090_001	Banana	nucleus	56.76	65.94
GSMUA_Achr7P00820_001	Banana	cytosol	11.85	58.76
Bra012098.1-P	Field mustard	cytosol	21.62	58.43
CDY53849	Canola	nucleus, plastid	24.53	57.84
KRH28659	Soybean	nucleus	56.13	56.02
KRH76798	Soybean	nucleus	55.93	55.93
CDY57127	Canola	plasma membrane	48.86	55.69
Solyc02g085420.2.1	Tomato	nucleus	54.89	55.23
AT3G50670.1	Thale cress	nucleus	48.65	54.8
CDX81371	Canola	nucleus	47.82	54.63
PGSC0003DMT400038558	Potato	nucleus	53.43	54.11
KRH69931	Soybean	cytosol, mitochondrion, nucleus	16.63	41.03
CDY30756	Canola	nucleus, plastid	32.02	37.11
HORVU5Hr1G078170.27	Barley	nucleus	19.96	20.78

Protein Annotations

MapMan:16.4.1.1.1	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0030619	EnsemblPlantsGene:HORVU1Hr1G046870	EnsemblPlants:HORVU1Hr1G046870.5	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0XWD1
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF12220	PFscan:PS50102	PANTHER:PTHR13952	PANTHER:PTHR13952:SF5
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	InterPro:U1snRNP70_N	UniParc:UPI000296D775
SEG:seg	InterPro:snRNP70_RRM	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:344583950..344588775

Molecular Weight (calculated)

56530.7 Da

IEP (calculated)

9.719

GRAVY (calculated)

-1.773

Length

481 amino acids

Sequence
(BLAST)

001: MGDYGNAMMR NQDAGVQTRV KAQSRANLLQ LKLIGQSHPT GLTTNLLKLF EPRPPLEHKP PLEKRKLPAY TGMSQFVSRF AEPGDPEYAP PVPTCETRAE
101: KKDRIRQLKL EEGAAKVAEE LQKYDPQNDP NVTGDPYKTL FVARLGYETS EQKVKRDFEA YGPIKRVRLI TDQVTNKPRG YAFVEYAHTR DMKSAYKQAD
201: GRKVDNKRVL VDVERGRTVP NWRPRRLGGG LGSSRIGGED AAQKHSAREQ QNAAGRPRSE EPRRDDRSAD RDREKSRDRV RERDRDEKTR ERSHDRARDR
301: DPREDRHHHR DRERTRDRDR ERDQERDRGR DRRDRDRHKD HGRDRDQDRD RKRERSHGRG RDRDRDYERA SHEQDPGRDR DYKRARHEHE RGHLQASDAD
401: YGNGEPGYNQ HEHHRSHEQY GYGLDGHDRS KRHEHYRDDS HSKMATNHQG QPENAEPAVP EEGEAYEEGD YQHIQAGEYR N

Best Arabidopsis Sequence Match ( AT3G50670.1 )
(BLAST)

001: MGDSGDPFLR NPNAAVQARA KVQNRANVLQ LKLMGQSHPT GLTNNLLKLF EPRPPLEYKP PPEKRKCPPY TGMAQFVSNF AEPGDPEYAP PKPEVELPSQ
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR

Arabidopsis Description

RNU1U1SNRNP [Source:UniProtKB/TrEMBL;Acc:A0A178VDW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.