Factsheet for GSMUA_Achr10P28670_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P09660_001
GSMUA_Achr4P09230_001
GSMUA_Achr6P15450_001
GSMUA_Achr8P10150_001
GSMUA_Achr8P24800_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50670.1	GSMUA_Achr11P...	AT1G02840.1	18674533
AT3G50670.1	GSMUA_Achr8P10150_001	AT1G02840.1	18674533
AT3G50670.1	GSMUA_Achr11P...	AT1G09140.1	21798944
AT3G50670.1	GSMUA_Achr8P10150_001	AT1G09140.1	21798944
AT3G50670.1	GSMUA_Achr1P09660_001	AT1G23860.1	10593939
AT3G50670.1	GSMUA_AchrUn_...	AT1G23860.1	10593939
AT3G50670.1	GSMUA_Achr1P09660_001	AT1G23860.1	9761791
AT3G50670.1	GSMUA_AchrUn_...	AT1G23860.1	9761791
AT3G50670.1	GSMUA_Achr10P...	AT2G37340.1	18674533
AT3G50670.1	GSMUA_Achr6P15450_001	AT2G37340.1	18674533
AT3G50670.1	GSMUA_Achr4P09230_001	AT4G31580.1	10593939
AT3G50670.1	GSMUA_Achr8P24800_001	AT4G31580.1	10593939
AT3G50670.1	GSMUA_Achr4P09230_001	AT4G31580.1	9761791
AT3G50670.1	GSMUA_Achr8P24800_001	AT4G31580.1	9761791

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P08090_001	Banana	nucleus	86.67	81.64
VIT_04s0023g01580.t01	Wine grape	nucleus	70.0	76.69
GSMUA_Achr7P00820_001	Banana	cytosol	16.92	68.04
TraesCS1B01G146600.1	Wheat	nucleus	60.51	65.92
CDY53849	Canola	nucleus, plastid	32.82	62.75
Bra012098.1-P	Field mustard	cytosol	28.46	62.36
CDX81371	Canola	nucleus	62.31	57.72
Os10t0115600-02	Rice	nucleus	67.95	57.24
KRH28659	Soybean	nucleus	70.51	57.05
AT3G50670.1	Thale cress	nucleus	62.31	56.91
CDY57127	Canola	plasma membrane	61.54	56.87
PGSC0003DMT400038558	Potato	nucleus	68.46	56.21
KRH76798	Soybean	nucleus	69.23	56.13
Solyc02g085420.2.1	Tomato	nucleus	67.95	55.44
HORVU1Hr1G046870.5	Barley	nucleus	67.69	54.89
TraesCS1D01G162500.1	Wheat	nucleus	67.69	54.89
TraesCS1A01G176500.1	Wheat	nucleus	67.44	54.68
TraesCS1B01G203600.1	Wheat	nucleus	66.92	54.26
EER95096	Sorghum	nucleus	66.67	53.72
TraesCS1D01G124800.1	Wheat	nucleus	64.62	52.61
TraesCS1A01G128600.1	Wheat	nucleus	64.1	51.98
EER91800	Sorghum	nucleus	64.36	51.65
HORVU1Hr1G030660.5	Barley	nucleus	63.08	49.4
Zm00001d014343_P002	Maize	nucleus	67.18	46.62
KRH69931	Soybean	cytosol, mitochondrion, nucleus	20.51	41.03
CDY30756	Canola	nucleus, plastid	43.59	40.96
GSMUA_Achr8P09080_001	Banana	nucleus	21.79	30.8

Protein Annotations

MapMan:16.4.1.1.1	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0030619	EnsemblPlantsGene:GSMUA_Achr10G28670_001	EnsemblPlants:GSMUA_Achr10P28670_001	EnsemblPlants:GSMUA_Achr10T28670_001	InterPro:IPR000504	InterPro:IPR012677
UniProt:M0RM91	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF12220	PFscan:PS50102	PANTHER:PTHR13952
PANTHER:PTHR13952:SF5	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	InterPro:U1snRNP70_N
UniParc:UPI000296AE8C	SEG:seg	InterPro:snRNP70_RRM	:	:	:

Description

U1 small nuclear ribonucleoprotein 70 kDa [Source:GMGC_GENE;Acc:GSMUA_Achr10G28670_001]

Coordinates

chr10:-:31410839..31419089

Molecular Weight (calculated)

46561.2 Da

IEP (calculated)

10.530

GRAVY (calculated)

-1.708

Length

390 amino acids

Sequence
(BLAST)

001: MGDYNDPFNR NNPAVQARTK AQNRANVLQL KLIGQSHPTG LTNNLLKLFE PRPPLLYKPP LEKRKCPPYT GMAQFVSHFA EPNDPEYAPP VIEGETPTQR
101: RARIRKLRLE EGARKAAEEL EKYDPSKDPH VTGDPYKTLF VARLNYETTE HRIKRELETY GPIKRVRLIT DKVTNKPRGY AFIEYMHTRD MKTAYKQADG
201: RKLDNRRVLV DVERGRTVPN WRPRRLGGGL GSTRIGGEEV NQKHSGREQQ QIAAGHSRSE EPRARDDRQL DREKSRERGR DREREVERPR DRSRERTRDR
301: DPREERHHHH RDRDRNREKE RERDRGRERD RGRGRDKDRD RGHEYDRERE RDRTRDRDRE RERDYDHASH ERESGYSLDK DSEHGRRMVQ

Best Arabidopsis Sequence Match ( AT3G50670.1 )
(BLAST)

001: MGDSGDPFLR NPNAAVQARA KVQNRANVLQ LKLMGQSHPT GLTNNLLKLF EPRPPLEYKP PPEKRKCPPY TGMAQFVSNF AEPGDPEYAP PKPEVELPSQ
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR

Arabidopsis Description

RNU1U1SNRNP [Source:UniProtKB/TrEMBL;Acc:A0A178VDW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.