Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22251 | Canola | cytosol | 31.52 | 56.49 |
| VIT_05s0102g00080.t01 | Wine grape | nucleus | 69.2 | 56.18 |
| CDY44222 | Canola | nucleus | 63.04 | 54.55 |
| CDX83484 | Canola | nucleus | 63.04 | 54.04 |
| Bra000304.1-P | Field mustard | nucleus | 62.68 | 53.89 |
| KRH01744 | Soybean | nucleus | 67.03 | 53.31 |
| KRH46935 | Soybean | nucleus | 63.04 | 53.21 |
| PGSC0003DMT400055636 | Potato | nucleus | 67.39 | 52.84 |
| Solyc09g098390.2.1 | Tomato | nucleus | 67.39 | 52.39 |
| CDY14697 | Canola | cytosol, mitochondrion | 34.06 | 51.93 |
| AT2G43370.1 | Thale cress | nucleus | 61.59 | 51.05 |
| CDY23361 | Canola | endoplasmic reticulum | 47.1 | 50.98 |
| Os09t0513700-01 | Rice | nucleus | 65.58 | 48.27 |
| TraesCS5D01G304800.1 | Wheat | nucleus | 64.86 | 42.72 |
| EER97037 | Sorghum | nucleus | 67.03 | 42.33 |
| TraesCS5A01G298000.1 | Wheat | nucleus | 65.22 | 40.45 |
| TraesCS5B01G297000.2 | Wheat | nucleus | 65.58 | 38.51 |
| HORVU5Hr1G078170.27 | Barley | nucleus | 59.78 | 35.71 |
| GSMUA_Achr7P00820_001 | Banana | cytosol | 11.23 | 31.96 |
| Zm00001d021137_P002 | Maize | nucleus | 51.09 | 28.83 |
| GSMUA_Achr10P... | Banana | nucleus | 30.8 | 21.79 |
| GSMUA_Achr7P08090_001 | Banana | nucleus | 30.43 | 20.29 |
Protein Annotations
| MapMan:16.4.4.1.1 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| EnsemblPlantsGene:GSMUA_Achr8G09080_001 | EnsemblPlants:GSMUA_Achr8P09080_001 | EnsemblPlants:GSMUA_Achr8T09080_001 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M0TNW1 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR13952 | PANTHER:PTHR13952:SF6 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000295CA69 | SEG:seg | InterPro:snRNP35_RRM |
Description
RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G09080_001]
Coordinates
chr8:-:6201993..6206816
Molecular Weight (calculated)
31887.4 Da
IEP (calculated)
9.804
GRAVY (calculated)
-1.008
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNANINAVF YADTYHPIQA GSIDGTDTLP HDNAVYRAVL CSAAGLYDPF GDPKVIGDPY CTVFVGRLSR FTDEETLRKA MSKYGTVKNL RLVRHIVTGA
101: SRGYAFVEYE TEREMRRAYE DAHHSLIDDY EVIVDYYRQH LMPGWIPRRL GGGLGGKKES GQLRFGGRER PFRAPLRPIP YADLQRLGIP PPPEGRYMSR
201: FQVPSPPRCR SSHADMDDSP ARQRRSRDKE EPAHRRHRRS ADRDDSSHKH HKHKHREHSH QHKKRSTSRD YDFLDH
101: SRGYAFVEYE TEREMRRAYE DAHHSLIDDY EVIVDYYRQH LMPGWIPRRL GGGLGGKKES GQLRFGGRER PFRAPLRPIP YADLQRLGIP PPPEGRYMSR
201: FQVPSPPRCR SSHADMDDSP ARQRRSRDKE EPAHRRHRRS ADRDDSSHKH HKHKHREHSH QHKKRSTSRD YDFLDH
001: MSGGGNNVVN KVFYATSYHP IQAGSIDGTD VAPHDNGVRR ALLCYNAGLY DPSGDSKAVG DPYCTLFVGR LSHHTTEDTL REVMSKYGRI KNLRLVRHIV
101: TGASRGYGFV EYETEKEMLR AYEDAHHSLI DGREIIVDYN RQQLMPGWIP RRLGGGLGGR KESGQLRFGG RDRPFRAPLR PIPHEDLKKL GIQLPPEGRY
201: MSRTQIPSPP RRKGSVSDRE EEYYREKSSV EREEEFKERS SLRSYHSHRS SAHTHSSHRR RSKDREECSR EESRSDRKER ARGMEDRYGD NKGEVSGSKR
301: SKRSEEDRSR KRHKHLPSHH HRRSYSQDHH SSD
101: TGASRGYGFV EYETEKEMLR AYEDAHHSLI DGREIIVDYN RQQLMPGWIP RRLGGGLGGR KESGQLRFGG RDRPFRAPLR PIPHEDLKKL GIQLPPEGRY
201: MSRTQIPSPP RRKGSVSDRE EEYYREKSSV EREEEFKERS SLRSYHSHRS SAHTHSSHRR RSKDREECSR EESRSDRKER ARGMEDRYGD NKGEVSGSKR
301: SKRSEEDRSR KRHKHLPSHH HRRSYSQDHH SSD
Arabidopsis Description
SNRNP35U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:Q8VY74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.