Factsheet for AT2G43370.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000304.1-P	Field mustard	nucleus	69.37	71.96
CDX83484	Canola	nucleus	66.97	69.25
CDY44222	Canola	nucleus	65.17	68.03
CDY22251	Canola	cytosol	30.33	65.58
GSMUA_Achr8P09080_001	Banana	nucleus	51.05	61.59
CDY14697	Canola	cytosol, mitochondrion	32.73	60.22
CDY23361	Canola	endoplasmic reticulum	45.05	58.82
KRH46935	Soybean	nucleus	54.65	55.66
KRH01744	Soybean	nucleus	57.06	54.76
VIT_05s0102g00080.t01	Wine grape	nucleus	53.75	52.65
PGSC0003DMT400055636	Potato	nucleus	53.45	50.57
Solyc09g098390.2.1	Tomato	nucleus	52.55	49.3
Os09t0513700-01	Rice	nucleus	54.65	48.53
TraesCS5D01G304800.1	Wheat	nucleus	54.35	43.2
EER97037	Sorghum	nucleus	54.35	41.42
TraesCS5A01G298000.1	Wheat	nucleus	52.25	39.1
TraesCS5B01G297000.2	Wheat	nucleus	54.35	38.51
HORVU5Hr1G078170.27	Barley	nucleus	49.25	35.5
Zm00001d021137_P002	Maize	nucleus	42.04	28.63
AT3G50670.1	Thale cress	nucleus	27.33	21.31

Protein Annotations

MapMan:16.4.4.1.1	Gene3D:3.30.70.330	EntrezGene:818938	UniProt:A0A178VZE2	ProteinID:AAB64330.1	ProteinID:AEC10257.1
EMBL:AK118423	ArrayExpress:AT2G43370	EnsemblPlantsGene:AT2G43370	RefSeq:AT2G43370	TAIR:AT2G43370	RefSeq:AT2G43370-TAIR-G
EnsemblPlants:AT2G43370.1	TAIR:AT2G43370.1	EMBL:AY072388	EMBL:AY114697	GO:GO:0000243	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005681
GO:GO:0005689	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009987	GO:GO:0016607	GO:GO:0017069	GO:GO:0030529	GO:GO:0034693	GO:GO:0071011
InterPro:IPR000504	InterPro:IPR012677	RefSeq:NP_850395.1	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:OAP10453.1	PFAM:PF00076
PO:PO:0000293	PFscan:PS50102	PANTHER:PTHR13952	PANTHER:PTHR13952:SF6	UniProt:Q8VY74	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000009E4FC	SEG:seg	InterPro:snRNP35_RRM

Description

SNRNP35U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:Q8VY74]

Coordinates

chr2:+:18013268..18015530

Molecular Weight (calculated)

38377.7 Da

IEP (calculated)

10.096

GRAVY (calculated)

-1.251

Length

333 amino acids

Sequence
(BLAST)

001: MSGGGNNVVN KVFYATSYHP IQAGSIDGTD VAPHDNGVRR ALLCYNAGLY DPSGDSKAVG DPYCTLFVGR LSHHTTEDTL REVMSKYGRI KNLRLVRHIV
101: TGASRGYGFV EYETEKEMLR AYEDAHHSLI DGREIIVDYN RQQLMPGWIP RRLGGGLGGR KESGQLRFGG RDRPFRAPLR PIPHEDLKKL GIQLPPEGRY
201: MSRTQIPSPP RRKGSVSDRE EEYYREKSSV EREEEFKERS SLRSYHSHRS SAHTHSSHRR RSKDREECSR EESRSDRKER ARGMEDRYGD NKGEVSGSKR
301: SKRSEEDRSR KRHKHLPSHH HRRSYSQDHH SSD

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.