Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012098.1-P | Field mustard | cytosol | 30.45 | 73.03 |
| CDY53849 | Canola | nucleus, plastid | 34.66 | 72.55 |
| CDY57127 | Canola | plasma membrane | 69.79 | 70.62 |
| CDX81371 | Canola | nucleus | 69.56 | 70.55 |
| VIT_04s0023g01580.t01 | Wine grape | nucleus | 57.85 | 69.38 |
| GSMUA_Achr10P... | Banana | nucleus | 56.91 | 62.31 |
| TraesCS1B01G146600.1 | Wheat | nucleus | 50.59 | 60.34 |
| GSMUA_Achr7P08090_001 | Banana | nucleus | 55.04 | 56.76 |
| KRH76798 | Soybean | nucleus | 63.23 | 56.13 |
| KRH28659 | Soybean | nucleus | 63.0 | 55.81 |
| Solyc02g085420.2.1 | Tomato | nucleus | 61.36 | 54.81 |
| PGSC0003DMT400038558 | Potato | nucleus | 60.42 | 54.32 |
| Os10t0115600-02 | Rice | nucleus | 55.27 | 50.97 |
| HORVU1Hr1G046870.5 | Barley | nucleus | 54.8 | 48.65 |
| TraesCS1A01G176500.1 | Wheat | nucleus | 54.57 | 48.44 |
| TraesCS1D01G162500.1 | Wheat | nucleus | 54.33 | 48.23 |
| TraesCS1D01G124800.1 | Wheat | nucleus | 54.1 | 48.23 |
| TraesCS1B01G203600.1 | Wheat | nucleus | 53.63 | 47.61 |
| TraesCS1A01G128600.1 | Wheat | nucleus | 53.16 | 47.19 |
| EER95096 | Sorghum | nucleus | 53.4 | 47.11 |
| EER91800 | Sorghum | nucleus | 53.4 | 46.91 |
| GSMUA_Achr7P00820_001 | Banana | cytosol | 10.54 | 46.39 |
| HORVU1Hr1G030660.5 | Barley | nucleus | 52.46 | 44.98 |
| CDY30756 | Canola | nucleus, plastid | 42.39 | 43.61 |
| Zm00001d014343_P002 | Maize | nucleus | 54.33 | 41.28 |
| KRH69931 | Soybean | cytosol, mitochondrion, nucleus | 14.52 | 31.79 |
| AT2G43370.1 | Thale cress | nucleus | 21.31 | 27.33 |
Protein Annotations
| MapMan:16.4.1.1.1 | Gene3D:3.30.70.330 | EntrezGene:824230 | UniProt:A0A178VDW4 | ProteinID:AAD12774.1 | ProteinID:AAD12775.1 |
| ProteinID:AEE78692.1 | ProteinID:AEE78693.1 | ArrayExpress:AT3G50670 | EnsemblPlantsGene:AT3G50670 | RefSeq:AT3G50670 | TAIR:AT3G50670 |
| RefSeq:AT3G50670-TAIR-G | EnsemblPlants:AT3G50670.1 | TAIR:AT3G50670.1 | EMBL:AY039874 | EMBL:AY094003 | Unigene:At.25571 |
| ProteinID:CAB62436.1 | GO:GO:0000243 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005681 | GO:GO:0005685 | GO:GO:0006139 | GO:GO:0006397 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0016607 | GO:GO:0030529 |
| GO:GO:0030619 | GO:GO:0071004 | GO:GO:0071011 | InterPro:IPR000504 | InterPro:IPR012677 | EMBL:M93439 |
| RefSeq:NP_190636.1 | RefSeq:NP_850676.1 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OAP04617.1 | PFAM:PF00076 | PFAM:PF12220 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS50102 | PANTHER:PTHR13952 | PANTHER:PTHR13952:SF5 | UniProt:Q42404 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | Symbol:U1-70K | InterPro:U1snRNP70_N | EMBL:U52910 | UniParc:UPI0000000B99 |
| SEG:seg | InterPro:snRNP70_RRM | : | : | : | : |
Description
RNU1U1SNRNP [Source:UniProtKB/TrEMBL;Acc:A0A178VDW4]
Coordinates
chr3:-:18826160..18829684
Molecular Weight (calculated)
50391.1 Da
IEP (calculated)
9.828
GRAVY (calculated)
-1.764
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSGDPFLR NPNAAVQARA KVQNRANVLQ LKLMGQSHPT GLTNNLLKLF EPRPPLEYKP PPEKRKCPPY TGMAQFVSNF AEPGDPEYAP PKPEVELPSQ
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.