Factsheet for Os10t0115600-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0155600-01
Os01t0316600-01
Os02t0610600-01
Os02t0789400-01
Os03t0285900-01
Os03t0344100-02
Os05t0120100-01
Os05t0162600-01
Os05t0364600-01
Os06t0187900-02
Os07t0673500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50670.1	Os01t0316600-01	AT1G02840.1	18674533
AT3G50670.1	Os03t0344100-02	AT1G02840.1	18674533
AT3G50670.1	Os05t0364600-01	AT1G02840.1	18674533
AT3G50670.1	Os07t0673500-01	AT1G02840.1	18674533
AT3G50670.1	Os01t0316600-01	AT1G09140.1	21798944
AT3G50670.1	Os03t0344100-02	AT1G09140.1	21798944
AT3G50670.1	Os05t0364600-01	AT1G09140.1	21798944
AT3G50670.1	Os07t0673500-01	AT1G09140.1	21798944
AT3G50670.1	Os01t0155600-01	AT2G37340.1	18674533
AT3G50670.1	Os03t0285900-01	AT2G37340.1	18674533
AT3G50670.1	Os05t0120100-01	AT2G37340.1	18674533
AT3G50670.1	Os05t0162600-01	AT2G37340.1	18674533
AT3G50670.1	Os02t0610600-01	AT4G31580.1	10593939
AT3G50670.1	Os02t0789400-01	AT4G31580.1	10593939
AT3G50670.1	Os06t0187900-02	AT4G31580.1	10593939
AT3G50670.1	Os02t0610600-01	AT4G31580.1	9761791
AT3G50670.1	Os02t0789400-01	AT4G31580.1	9761791
AT3G50670.1	Os06t0187900-02	AT4G31580.1	9761791

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G146600.1	Wheat	nucleus	61.34	79.33
TraesCS1D01G124800.1	Wheat	nucleus	81.64	78.91
EER95096	Sorghum	nucleus	82.29	78.72
TraesCS1A01G128600.1	Wheat	nucleus	80.78	77.75
EER91800	Sorghum	nucleus	78.19	74.49
HORVU1Hr1G030660.5	Barley	nucleus	79.48	73.9
VIT_04s0023g01580.t01	Wine grape	nucleus	52.92	68.82
GSMUA_Achr10P...	Banana	nucleus	57.24	67.95
Zm00001d014343_P002	Maize	nucleus	81.64	67.26
GSMUA_Achr7P08090_001	Banana	nucleus	58.32	65.22
Bra012098.1-P	Field mustard	cytosol	23.54	61.24
CDY53849	Canola	nucleus, plastid	25.49	57.84
CDY57127	Canola	plasma membrane	50.97	55.92
CDX81371	Canola	nucleus	50.76	55.82
AT3G50670.1	Thale cress	nucleus	50.97	55.27
KRH28659	Soybean	nucleus	57.02	54.77
GSMUA_Achr7P00820_001	Banana	cytosol	11.45	54.64
KRH76798	Soybean	nucleus	56.37	54.26
Solyc02g085420.2.1	Tomato	nucleus	55.72	53.97
PGSC0003DMT400038558	Potato	nucleus	54.21	52.84
KRH69931	Soybean	cytosol, mitochondrion, nucleus	15.98	37.95
CDY30756	Canola	nucleus, plastid	33.69	37.59
Os09t0513700-01	Rice	nucleus	19.65	24.27

Protein Annotations

MapMan:16.4.1.1.1	Gene3D:3.30.70.330	EntrezGene:4347985	ProteinID:ABB46629.1	ProteinID:BAF25964.1	ProteinID:BAT09658.1
GO:GO:0000243	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005685
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030619	GO:GO:0071004
GO:GO:0071011	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os10g0115600	EnsemblPlants:Os10t0115600-02
PFAM:PF00076	PFAM:PF12220	PFscan:PS50102	PANTHER:PTHR13952	PANTHER:PTHR13952:SF5	UniProt:Q33BE1
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	InterPro:U1snRNP70_N	UniParc:UPI00005E1B2A
RefSeq:XP_015614284.1	SEG:seg	InterPro:snRNP70_RRM	:	:	:

Description

U1 snRNP 70K, U1-snRNP-specific 70K protein, U1 small nuclear ribonucleoprotein 70KHypothetical conserved gene. (Os10t0115600-01);Similar to U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa) (snRNP70) (U1-70K). Splice isoform Short. (Os10t0115600-02)

Coordinates

chr10:-:1007665..1012906

Molecular Weight (calculated)

55117.0 Da

IEP (calculated)

9.467

GRAVY (calculated)

-1.904

Length

463 amino acids

Sequence
(BLAST)

001: MGDYGSGMMR GNPDGGGMQS RTKGQRVNVQ QLKLMGQGHP TGLTPNLLKL FEPRPPLDFK PPVEKRKLPA YTGMAQFVSQ FAEPGDPEYA PPVPTCETKA
101: EKKDRIRKSK LDQGAAKVAE ELQKYDPQSD PNATGDPYKT LFVARLNYET SEHRVKREFE AYGPIKRVRL VTDKETNKPR GYAFIEYMHT RDMKNAYKQA
201: DGRKVDNRRV LVDVERGRTV PNWRPRRLGG GLGSSRIGGE NAEQKLSTRD QQHAGRPRSE EPRRDERRAD RDREKSRERP RERDRDERTR ERSHDRTRER
301: DSKEDRHHHR DRDRTRDRER GRDRERDHGR DRDRERDRRD RDRDRDRGRD YERDRDRGHD RHRERGRDRE RDYERASHER DRGHMHERDA EFANGEPKHD
401: QEYGYNYEQH KSHDAYETER SKRHEHEYYQ MQPNNTEPEG PEEGEAYDEG DYQYHQAADE HNN

Best Arabidopsis Sequence Match ( AT3G50670.1 )
(BLAST)

001: MGDSGDPFLR NPNAAVQARA KVQNRANVLQ LKLMGQSHPT GLTNNLLKLF EPRPPLEYKP PPEKRKCPPY TGMAQFVSNF AEPGDPEYAP PKPEVELPSQ
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR

Arabidopsis Description

RNU1U1SNRNP [Source:UniProtKB/TrEMBL;Acc:A0A178VDW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.