Factsheet for Os06t0187900-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0155600-01
Os01t0316600-01
Os01t0590900-01
Os03t0285900-01
Os03t0344100-02
Os05t0120100-01
Os05t0162600-01
Os05t0364600-01
Os07t0673500-01
Os08t0139000-02
Os10t0115600-02
Os12t0460800-03

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24590.1	Os01t0316600-01	AT1G09140.1	21798944
AT2G24590.1	Os03t0344100-02	AT1G09140.1	21798944
AT2G24590.1	Os05t0364600-01	AT1G09140.1	21798944
AT2G24590.1	Os07t0673500-01	AT1G09140.1	21798944
AT2G24590.1	Os01t0590900-01	AT4G32660.1	21798944
AT2G24590.1	Os08t0139000-02	AT5G54580.1	21798944
AT4G31580.1	Os01t0155600-01	AT2G37340.1	18674533
AT4G31580.1	Os03t0285900-01	AT2G37340.1	18674533
AT4G31580.1	Os05t0120100-01	AT2G37340.1	18674533
AT4G31580.1	Os05t0162600-01	AT2G37340.1	18674533
AT4G31580.1	Os10t0115600-02	AT3G50670.1	10593939
AT4G31580.1	Os10t0115600-02	AT3G50670.1	9761791
AT4G31580.1	Os12t0460800-03	AT4G24740.1	10593939

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER87987	Sorghum	nucleus	89.73	89.25
TraesCS7B01G056600.2	Wheat	nucleus	85.95	86.89
TraesCSU01G104300.1	Wheat	nucleus	84.86	86.26
TraesCS7A01G152800.1	Wheat	nucleus	84.86	86.26
GSMUA_Achr8P24800_001	Banana	nucleus	82.16	83.52
GSMUA_Achr4P09230_001	Banana	nucleus	80.54	82.78
Os02t0789400-01	Rice	nucleus	80.0	80.0
VIT_04s0069g00800.t01	Wine grape	nucleus	70.27	71.82
PGSC0003DMT400067677	Potato	nucleus	70.81	71.58
Os02t0610600-01	Rice	nucleus	76.22	70.5
KRH04931	Soybean	nucleus	67.03	69.66
KRH16160	Soybean	endoplasmic reticulum	67.03	69.66
PGSC0003DMT400075974	Potato	nucleus	68.11	68.85
CDX72313	Canola	nucleus	69.19	64.97
CDY13444	Canola	nucleus	69.19	64.32
Bra023994.1-P	Field mustard	nucleus	68.65	63.82
AT4G31580.1	Thale cress	nucleus	68.11	63.0
AT2G24590.1	Thale cress	nucleus	66.49	62.76
Zm00001d045076_P001	Maize	nucleus	70.81	62.68
CDY45585	Canola	nucleus	64.32	60.71
CDY20328	Canola	nucleus	64.32	60.71
Bra032082.1-P	Field mustard	nucleus	64.86	59.11
HORVU7Hr1G031320.1	Barley	nucleus	85.95	55.21
Solyc08g069120.2.1	Tomato	nucleus	68.65	52.26
VIT_10s0042g00400.t01	Wine grape	endoplasmic reticulum, extracellular	10.27	48.72

Protein Annotations

MapMan:16.4.6.4	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EntrezGene:4340353	EMBL:AK063879	EMBL:AK071765
ProteinID:BAD36521.1	ProteinID:BAD72462.1	ProteinID:BAF18932.1	ProteinID:BAS96537.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0008380	GO:GO:0009987
GO:GO:0046872	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os06g0187900
EnsemblPlants:Os06t0187900-02	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147
PANTHER:PTHR23147:SF26	UniProt:Q69KL9	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360
SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI0000403ABD	RefSeq:XP_015640942.1	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf
SEG:seg	:	:	:	:	:

Description

RSZ21ARNA recognition motif, RNP-1 domain containing protein. (Os06t0187900-01);RNA recognition motif, RNP-1 domain containing protein. (Os06t0187900-02)

Coordinates

chr6:+:4428678..4432280

Molecular Weight (calculated)

21184.5 Da

IEP (calculated)

11.775

GRAVY (calculated)

-1.258

Length

185 amino acids

Sequence
(BLAST)

001: MARVYVGNLD PRVTARELED EFRVFGVLRS VWVARKPPGF AFIDFDDRRD AQDAIRDIDG KNGWRVELSR NASSGRGGRD RYGSSESKCY ECGETGHFAR
101: ECRLRIGSGG LGSGRRRSRS RSRSRSPRYR RSPSYGRRSY SPAGRSPRRR SVSPARARSY SRSPQYNRGR DESPAYDNGY RRSRS

Best Arabidopsis Sequence Match ( AT4G31580.1 )
(BLAST)

001: MSRVYVGNLD PRVTERELED EFRAFGVVRS VWVARRPPGY AFLDFEDPRD ARDAIRALDG KNGWRVEQSH NRGERGGGGR GGDRGGGGGG RGGRGGSDLK
101: CYECGETGHF ARECRNRGGT GRRRSKSRSR TPPRYRRSPS YGRRSYSPRA RSPPPPRRRS PSPPPARGRS YSRSPPPYRA REEVPYANGN GLKERRRSRS

Arabidopsis Description

RSZ22Serine/arginine-rich splicing factor RSZ22 [Source:UniProtKB/Swiss-Prot;Acc:O81126]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.