Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G24590.1 | Thale cress | nucleus | 85.0 | 86.73 |
| CDY13444 | Canola | nucleus | 84.0 | 84.42 |
| Bra023994.1-P | Field mustard | nucleus | 83.5 | 83.92 |
| CDX72313 | Canola | nucleus | 82.5 | 83.76 |
| KRH04931 | Soybean | nucleus | 73.0 | 82.02 |
| KRH16160 | Soybean | endoplasmic reticulum | 73.0 | 82.02 |
| PGSC0003DMT400075974 | Potato | nucleus | 73.5 | 80.33 |
| PGSC0003DMT400067677 | Potato | nucleus | 73.0 | 79.78 |
| EES07659 | Sorghum | nucleus | 60.0 | 73.62 |
| EER87987 | Sorghum | nucleus | 64.0 | 68.82 |
| GSMUA_Achr4P09230_001 | Banana | nucleus | 61.5 | 68.33 |
| GSMUA_Achr8P24800_001 | Banana | nucleus | 62.0 | 68.13 |
| Os06t0187900-02 | Rice | nucleus | 63.0 | 68.11 |
| TraesCSU01G104300.1 | Wheat | nucleus | 61.0 | 67.03 |
| TraesCS7A01G152800.1 | Wheat | nucleus | 61.0 | 67.03 |
| TraesCS6B01G382600.1 | Wheat | nucleus | 65.0 | 67.01 |
| TraesCS6A01G349500.1 | Wheat | nucleus | 65.0 | 67.01 |
| TraesCS6D01G332000.1 | Wheat | nucleus | 64.5 | 66.49 |
| TraesCS7B01G056600.2 | Wheat | nucleus | 60.5 | 66.12 |
| AT1G23860.1 | Thale cress | nucleus | 61.0 | 65.24 |
| Os02t0789400-01 | Rice | nucleus | 60.0 | 64.86 |
| Solyc08g069120.2.1 | Tomato | nucleus | 73.0 | 60.08 |
| Os02t0610600-01 | Rice | nucleus | 59.5 | 59.5 |
| Zm00001d004066_P001 | Maize | cytosol, golgi, nucleus | 42.0 | 55.26 |
| Zm00001d052062_P002 | Maize | extracellular | 49.0 | 55.06 |
| Zm00001d045330_P001 | Maize | nucleus | 41.5 | 54.61 |
| HORVU6Hr1G083840.4 | Barley | plastid | 65.0 | 52.85 |
| Zm00001d045076_P001 | Maize | nucleus | 52.5 | 50.24 |
| TraesCS6B01G248500.1 | Wheat | nucleus | 62.0 | 49.8 |
| TraesCS6A01G219000.2 | Wheat | nucleus | 61.5 | 49.8 |
| VIT_10s0042g00400.t01 | Wine grape | endoplasmic reticulum, extracellular | 9.5 | 48.72 |
| TraesCS6D01G202100.1 | Wheat | nucleus | 62.0 | 46.1 |
| Zm00001d017177_P007 | Maize | nucleus | 57.5 | 45.45 |
| Zm00001d018341_P007 | Maize | cytosol, nucleus, plasma membrane | 52.5 | 45.26 |
| Zm00001d051052_P001 | Maize | nucleus | 60.0 | 43.32 |
| HORVU7Hr1G031320.1 | Barley | nucleus | 61.0 | 42.36 |
| Zm00001d028789_P001 | Maize | cytosol | 45.0 | 40.54 |
| OQU85289 | Sorghum | plastid | 59.0 | 37.22 |
Protein Annotations
| MapMan:16.4.6.4 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | EntrezGene:829285 | ProteinID:AEE85931.1 | ProteinID:AEE85932.1 |
| EMBL:AF033586 | EMBL:AJ002378 | ArrayExpress:AT4G31580 | EnsemblPlantsGene:AT4G31580 | RefSeq:AT4G31580 | TAIR:AT4G31580 |
| RefSeq:AT4G31580-TAIR-G | EnsemblPlants:AT4G31580.1 | TAIR:AT4G31580.1 | EMBL:AY065387 | EMBL:AY086525 | EMBL:AY117206 |
| ProteinID:CAA19765.1 | ProteinID:CAB79876.1 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005681 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0008380 | GO:GO:0009987 |
| GO:GO:0016607 | GO:GO:0046872 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | RefSeq:NP_001078474.1 |
| RefSeq:NP_194886.1 | InterPro:Nucleotide-bd_a/b_plait_sf | UniProt:O81126 | PFAM:PF00076 | PFAM:PF00098 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR23147 |
| PANTHER:PTHR23147:SF23 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00343 | SMART:SM00360 | Symbol:SRZ-22 |
| SUPFAM:SSF54928 | SUPFAM:SSF57756 | UniParc:UPI00000A6E31 | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg |
Description
RSZ22Serine/arginine-rich splicing factor RSZ22 [Source:UniProtKB/Swiss-Prot;Acc:O81126]
Coordinates
chr4:+:15306544..15309035
Molecular Weight (calculated)
22459.1 Da
IEP (calculated)
11.934
GRAVY (calculated)
-1.446
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRVYVGNLD PRVTERELED EFRAFGVVRS VWVARRPPGY AFLDFEDPRD ARDAIRALDG KNGWRVEQSH NRGERGGGGR GGDRGGGGGG RGGRGGSDLK
101: CYECGETGHF ARECRNRGGT GRRRSKSRSR TPPRYRRSPS YGRRSYSPRA RSPPPPRRRS PSPPPARGRS YSRSPPPYRA REEVPYANGN GLKERRRSRS
101: CYECGETGHF ARECRNRGGT GRRRSKSRSR TPPRYRRSPS YGRRSYSPRA RSPPPPRRRS PSPPPARGRS YSRSPPPYRA REEVPYANGN GLKERRRSRS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.