Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P24800_001 | Banana | nucleus | 49.1 | 74.73 |
| GSMUA_Achr4P09230_001 | Banana | nucleus | 48.01 | 73.89 |
| Os02t0610600-01 | Rice | nucleus | 51.62 | 71.5 |
| Zm00001d017177_P007 | Maize | nucleus | 63.18 | 69.17 |
| KRH04931 | Soybean | nucleus | 42.24 | 65.73 |
| VIT_04s0069g00800.t01 | Wine grape | nucleus | 42.6 | 65.19 |
| KRH16160 | Soybean | endoplasmic reticulum | 41.88 | 65.17 |
| PGSC0003DMT400067677 | Potato | nucleus | 42.6 | 64.48 |
| CDX72313 | Canola | nucleus | 45.49 | 63.96 |
| PGSC0003DMT400075974 | Potato | nucleus | 42.24 | 63.93 |
| TraesCS6A01G219000.2 | Wheat | nucleus | 56.68 | 63.56 |
| TraesCS6B01G248500.1 | Wheat | nucleus | 56.68 | 63.05 |
| Zm00001d052062_P002 | Maize | extracellular | 40.43 | 62.92 |
| CDY13444 | Canola | nucleus | 45.13 | 62.81 |
| Bra023994.1-P | Field mustard | nucleus | 45.13 | 62.81 |
| Zm00001d004066_P001 | Maize | cytosol, golgi, nucleus | 33.94 | 61.84 |
| Zm00001d045330_P001 | Maize | nucleus | 33.57 | 61.18 |
| AT4G31580.1 | Thale cress | nucleus | 43.32 | 60.0 |
| CDY45585 | Canola | nucleus | 41.88 | 59.18 |
| CDY20328 | Canola | nucleus | 41.88 | 59.18 |
| AT2G24590.1 | Thale cress | nucleus | 41.88 | 59.18 |
| Zm00001d045076_P001 | Maize | nucleus | 44.4 | 58.85 |
| TraesCS6D01G202100.1 | Wheat | nucleus | 56.68 | 58.36 |
| Bra032082.1-P | Field mustard | nucleus | 41.88 | 57.14 |
| OQU85289 | Sorghum | plastid | 65.34 | 57.1 |
| Zm00001d018341_P007 | Maize | cytosol, nucleus, plasma membrane | 43.68 | 52.16 |
| VIT_10s0042g00400.t01 | Wine grape | endoplasmic reticulum, extracellular | 7.22 | 51.28 |
| Solyc08g069120.2.1 | Tomato | nucleus | 42.6 | 48.56 |
| Zm00001d028789_P001 | Maize | cytosol | 36.46 | 45.5 |
Protein Annotations
| EntrezGene:100273521 | MapMan:16.4.6.4 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | ProteinID:AQK53514.1 | UniProt:B6TJ91 |
| EMBL:EU965056 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00098 |
| PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF23 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | UniParc:UPI000182D5FA | EnsemblPlantsGene:Zm00001d051052 |
| EnsemblPlants:Zm00001d051052_P001 | EnsemblPlants:Zm00001d051052_T001 | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg | : |
Description
Splicing factor%2C arginine/serine-rich 7
Coordinates
chr4:-:138842282..138850449
Molecular Weight (calculated)
31318.4 Da
IEP (calculated)
12.022
GRAVY (calculated)
-1.497
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MARVFVGNLD PRVTAREIED EFRTFGVLKS VWVARKPPGF AFIDFDDRRD AQDAIRDLDG KNGWRVELST KDGGGRGRDR NGSDMKCYEC GEVGHFAREC
101: RLRIGSGGLG SGRRRSRSPR YRSRSRSRSR SPRHRRSPSY GRRSYSPRDR SPRRRSYSRS PPLPPPPPRN NSMSPRGARE MSRSSPPPPK NNSSSPREAR
201: EMSRSPPPPA KNNRSSPREA REMSRSPPPP PPRNNSRSPP GARDVSRSPP PPPDARRSYS RSPEQQPQHE SPYANDA
101: RLRIGSGGLG SGRRRSRSPR YRSRSRSRSR SPRHRRSPSY GRRSYSPRDR SPRRRSYSRS PPLPPPPPRN NSMSPRGARE MSRSSPPPPK NNSSSPREAR
201: EMSRSPPPPA KNNRSSPREA REMSRSPPPP PPRNNSRSPP GARDVSRSPP PPPDARRSYS RSPEQQPQHE SPYANDA
001: MTRVYVGNLD PRVTERELED EFKAFGVLRN VWVARRPPGY AFLEFDDERD ALDAISALDR KNGWRVELSH KDKGGRGGGG GRRGGIEDSK CYECGELGHF
101: ARECRRGRGS VRRRSPSPRR RRSPDYGYAR RSYSRSPPYR GSRRDSPRRR DSPYGRRSPY ANGV
101: ARECRRGRGS VRRRSPSPRR RRSPDYGYAR RSYSRSPPYR GSRRDSPRRR DSPYGRRSPY ANGV
Arabidopsis Description
RSZ21SRZ21 [Source:UniProtKB/TrEMBL;Acc:A0A178WC08]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.