Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 6
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
23198870
mitochondrion: 27297264 mitochondrion: 29575040 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
23198870
doi
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID:
29575040
doi
Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES14515 | Sorghum | plastid | 87.86 | 87.86 |
| Os08t0139000-02 | Rice | mitochondrion | 81.43 | 80.85 |
| TraesCS7B01G207500.1 | Wheat | mitochondrion | 79.29 | 73.03 |
| TraesCS7A01G307200.1 | Wheat | plastid | 79.29 | 72.55 |
| Bra002976.1-P | Field mustard | mitochondrion | 46.43 | 62.5 |
| GSMUA_Achr11P... | Banana | mitochondrion | 47.86 | 62.04 |
| GSMUA_Achr8P07380_001 | Banana | mitochondrion | 59.29 | 61.48 |
| KRH25927 | Soybean | mitochondrion, plastid | 63.57 | 61.38 |
| KRH55574 | Soybean | mitochondrion, plastid | 60.71 | 58.62 |
| GSMUA_Achr5P26410_001 | Banana | cytosol, mitochondrion, nucleus | 47.86 | 58.26 |
| CDY43035 | Canola | plastid | 61.43 | 56.21 |
| Bra029020.1-P | Field mustard | plastid | 61.43 | 56.21 |
| CDY42466 | Canola | plastid | 60.0 | 54.9 |
| Solyc07g063900.2.1 | Tomato | plastid | 58.57 | 54.3 |
| CDY43820 | Canola | plastid | 60.71 | 54.14 |
| CDY64931 | Canola | plastid | 58.57 | 53.59 |
| AT5G54580.1 | Thale cress | mitochondrion, plastid | 59.29 | 53.21 |
| PGSC0003DMT400049607 | Potato | plastid | 58.57 | 52.23 |
| VIT_08s0007g00070.t01 | Wine grape | mitochondrion | 47.86 | 50.38 |
| Zm00001d006566_P002 | Maize | mitochondrion | 39.29 | 47.83 |
| Zm00001d028661_P001 | Maize | plastid | 49.29 | 41.57 |
| Zm00001d026016_P002 | Maize | plastid | 30.71 | 28.67 |
| Zm00001d031168_P001 | Maize | plastid | 27.86 | 25.16 |
| Zm00001d012052_P001 | Maize | mitochondrion, plastid | 27.86 | 25.0 |
| Zm00001d041246_P001 | Maize | nucleus | 25.71 | 24.83 |
| Zm00001d041949_P001 | Maize | mitochondrion | 18.57 | 24.07 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 27.14 | 23.9 |
| Zm00001d034768_P005 | Maize | nucleus | 27.86 | 19.02 |
| Zm00001d041750_P001 | Maize | mitochondrion | 30.71 | 16.48 |
| Zm00001d023734_P003 | Maize | nucleus, plastid | 32.14 | 15.68 |
| Zm00001d022065_P001 | Maize | mitochondrion | 32.14 | 14.61 |
| Zm00001d019041_P001 | Maize | extracellular, plasma membrane | 27.86 | 13.31 |
| Zm00001d033511_P002 | Maize | cytosol, mitochondrion, nucleus | 22.86 | 10.77 |
| Zm00001d013543_P009 | Maize | extracellular, mitochondrion, plasma membrane | 22.86 | 10.29 |
| Zm00001d007799_P001 | Maize | mitochondrion, plastid | 26.43 | 9.64 |
| Zm00001d017930_P003 | Maize | plastid | 26.43 | 9.0 |
Protein Annotations
| EntrezGene:100283837 | MapMan:16.12.5.2 | Gene3D:3.30.70.330 | ProteinID:AQK41716.1 | UniProt:B6T5W5 | EMBL:BT063548 |
| EMBL:EU960380 | EMBL:EU966130 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0080156 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45392 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000182C0DB | EnsemblPlantsGene:Zm00001d024675 | EnsemblPlants:Zm00001d024675_P001 | EnsemblPlants:Zm00001d024675_T001 |
| SEG:seg | : | : | : | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr10:+:83281590..83288964
Molecular Weight (calculated)
14998.6 Da
IEP (calculated)
10.258
GRAVY (calculated)
-0.401
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAVARSGF RRMFSVSAFA PPKAPAARPK ADPSPNLFVS GLSKRTTSEG LREAFAEFGE VLHARVVTDR VSGFSKGFGF VRYATTEEAA KGIEGKDGKF
101: LDGWVIFAEY AKPRPPPEET GMNSQPQQSW GAPSGSWGAQ
101: LDGWVIFAEY AKPRPPPEET GMNSQPQQSW GAPSGSWGAQ
001: MAMAMRLPAI SRAVTEVASA PVGLRRLFCS NASRFSFLSP QAESQTPARP QAEPSTNLFV SGLSKRTTSE GLRTAFAQFG EVADAKVVTD RVSGYSKGFG
101: FVRYATLEDS AKGIAGMDGK FLDGWVIFAE YARPREQSQS YQPQNNMSRP PYYGNR
101: FVRYATLEDS AKGIAGMDGK FLDGWVIFAE YARPREQSQS YQPQNNMSRP PYYGNR
Arabidopsis Description
ORRM2Organelle RRM domain-containing protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FIU6]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.