Factsheet for Bra002976.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003085.1-P
Bra005486.1-P
Bra017974.1-P
Bra021860.1-P
Bra022624.1-P
Bra023895.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54580.1	Bra005486.1-P	AT2G33550.1	21798944
AT5G54580.1	Bra021860.1-P	AT2G33550.1	21798944
AT5G54580.1	Bra023895.1-P	AT3G21215.1	21798944
AT5G54580.1	Bra017974.1-P	AT3G49580.1	21798944
AT5G54580.1	Bra003085.1-P	AT5G53060.1	21798944
AT5G54580.1	Bra022624.1-P	AT5G53060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42466	Canola	plastid	94.23	64.05
CDY64931	Canola	plastid	92.31	62.75
Bra029020.1-P	Field mustard	plastid	92.31	62.75
GSMUA_Achr11P...	Banana	mitochondrion	62.5	60.19
AT5G54580.1	Thale cress	mitochondrion, plastid	89.42	59.62
GSMUA_Achr5P26410_001	Banana	cytosol, mitochondrion, nucleus	62.5	56.52
Solyc07g063900.2.1	Tomato	plastid	68.27	47.02
KRH25927	Soybean	mitochondrion, plastid	65.38	46.9
Zm00001d024675_P001	Maize	mitochondrion	62.5	46.43
KRH55574	Soybean	mitochondrion, plastid	64.42	46.21
Os08t0139000-02	Rice	mitochondrion	62.5	46.1
EES14515	Sorghum	plastid	61.54	45.71
PGSC0003DMT400049607	Potato	plastid	68.27	45.22
GSMUA_Achr8P07380_001	Banana	mitochondrion	55.77	42.96
TraesCS7B01G207500.1	Wheat	mitochondrion	62.5	42.76
TraesCS7A01G307200.1	Wheat	plastid	60.58	41.18
VIT_08s0007g00070.t01	Wine grape	mitochondrion	50.0	39.1
Bra008100.1-P	Field mustard	cytosol	27.88	35.37
Bra005189.1-P	Field mustard	plastid	46.15	33.33
Bra028739.1-P	Field mustard	mitochondrion	38.46	27.4
Bra020279.1-P	Field mustard	mitochondrion	28.85	27.27
Bra037056.1-P	Field mustard	mitochondrion	38.46	26.67
Bra013997.1-P	Field mustard	mitochondrion	35.58	25.52
Bra025674.1-P	Field mustard	mitochondrion	29.81	21.38
Bra011869.1-P	Field mustard	cytosol	31.73	20.37
Bra029692.1-P	Field mustard	mitochondrion	27.88	20.28
Bra001972.1-P	Field mustard	nucleus	31.73	20.12
Bra030284.1-P	Field mustard	nucleus	31.73	19.64
Bra031210.1-P	Field mustard	nucleus	31.73	19.64
Bra000516.1-P	Field mustard	mitochondrion	25.0	19.4
Bra010693.1-P	Field mustard	nucleus	30.77	19.39
Bra014000.1-P	Field mustard	mitochondrion	35.58	16.67
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	40.38	16.34
Bra008020.1-P	Field mustard	endoplasmic reticulum	28.85	14.42
Bra025205.1-P	Field mustard	nucleus	31.73	14.22
Bra008142.1-P	Field mustard	mitochondrion	35.58	14.02
Bra032933.1-P	Field mustard	nucleus	32.69	13.99
Bra015926.1-P	Field mustard	mitochondrion	35.58	12.98
Bra035944.1-P	Field mustard	plastid	30.77	12.17
Bra012986.1-P	Field mustard	mitochondrion	30.77	10.49
Bra031244.1-P	Field mustard	plastid	32.69	9.12
Bra005798.1-P	Field mustard	nucleus	25.0	8.5

Protein Annotations

EnsemblPlants:Bra002976.1	EnsemblPlants:Bra002976.1-P	EnsemblPlantsGene:Bra002976	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45392	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI00025440AD	UniProt:M4CFJ4	MapMan:16.12.5.2	:	:

Description

AT5G54580 (E=9e-038) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA10:+:6327480..6328753

Molecular Weight (calculated)

11529.7 Da

IEP (calculated)

10.273

GRAVY (calculated)

-0.562

Length

104 amino acids

Sequence
(BLAST)

001: MAIASRISRS KGLSKRTTSE GLRTAFAQFG EVADAKVVTD RVSGYSKGFG FVRYTTLEDS AKGIAGMDGK FLDGWVIFAE YARPREPYRP QNNMPPPPPY
101: GNRY

Best Arabidopsis Sequence Match ( AT5G54580.1 )
(BLAST)

001: MAMAMRLPAI SRAVTEVASA PVGLRRLFCS NASRFSFLSP QAESQTPARP QAEPSTNLFV SGLSKRTTSE GLRTAFAQFG EVADAKVVTD RVSGYSKGFG
101: FVRYATLEDS AKGIAGMDGK FLDGWVIFAE YARPREQSQS YQPQNNMSRP PYYGNR

Arabidopsis Description

ORRM2Organelle RRM domain-containing protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FIU6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.