Factsheet for Bra031244.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19589	Canola	plastid	99.2	99.2
AT3G20930.2	Thale cress	plastid	81.5	80.21
GSMUA_Achr2P01230_001	Banana	nucleus	51.47	61.54
KRG92035	Soybean	plastid	57.91	55.38
VIT_13s0106g00500.t01	Wine grape	plastid	56.84	51.83
Solyc11g007160.1.1	Tomato	plastid	53.08	49.5
PGSC0003DMT400050134	Potato	plastid	52.81	49.25
TraesCS6B01G322400.1	Wheat	plastid	49.87	47.94
TraesCS6A01G292000.1	Wheat	plastid	49.87	47.94
TraesCS6D01G273200.1	Wheat	plastid	48.79	46.67
Os02t0730800-01	Rice	plastid	49.33	46.12
KXG30823	Sorghum	plastid	49.33	45.89
Zm00001d017930_P003	Maize	plastid	46.65	42.34
Bra002976.1-P	Field mustard	mitochondrion	9.12	32.69
Bra028739.1-P	Field mustard	mitochondrion	11.8	30.14
Bra037056.1-P	Field mustard	mitochondrion	12.06	30.0
Bra013997.1-P	Field mustard	mitochondrion	11.53	29.66
Bra020279.1-P	Field mustard	mitochondrion	8.58	29.09
Bra005189.1-P	Field mustard	plastid	10.99	28.47
Bra008100.1-P	Field mustard	cytosol	6.17	28.05
Bra029020.1-P	Field mustard	plastid	11.26	27.45
Bra029692.1-P	Field mustard	mitochondrion	9.38	24.48
Bra025674.1-P	Field mustard	mitochondrion	9.12	23.45
Bra000516.1-P	Field mustard	mitochondrion	8.31	23.13
Bra030284.1-P	Field mustard	nucleus	9.38	20.83
Bra001972.1-P	Field mustard	nucleus	8.85	20.12
Bra014000.1-P	Field mustard	mitochondrion	11.53	19.37
Bra010693.1-P	Field mustard	nucleus	8.31	18.79
Bra011869.1-P	Field mustard	cytosol	8.04	18.52
Bra031210.1-P	Field mustard	nucleus	8.31	18.45
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	11.8	17.12
Bra025205.1-P	Field mustard	nucleus	10.19	16.38
Bra008020.1-P	Field mustard	endoplasmic reticulum	9.12	16.35
Bra032933.1-P	Field mustard	nucleus	9.92	15.23
Bra008142.1-P	Field mustard	mitochondrion	10.46	14.77
Bra015926.1-P	Field mustard	mitochondrion	10.19	13.33
Bra035944.1-P	Field mustard	plastid	9.38	13.31
Bra012986.1-P	Field mustard	mitochondrion	9.12	11.15
Bra005798.1-P	Field mustard	nucleus	6.97	8.5

Protein Annotations

MapMan:16.12.5.2	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra031244	EnsemblPlants:Bra031244.1	EnsemblPlants:Bra031244.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016554	InterPro:IPR000504	InterPro:IPR012677	UniProt:M4ER21	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR31346	PANTHER:PTHR31346:SF9	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002547925	SEG:seg	:	:

Description

AT3G20930 (E=5e-152) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA05:-:16732311..16734229

Molecular Weight (calculated)

41268.8 Da

IEP (calculated)

6.115

GRAVY (calculated)

-0.260

Length

373 amino acids

Sequence
(BLAST)

001: MEALIASASF FLPFSNSPSL TLNNPSSSFS PNIKFGTFRK NYISSSSHLV YSSSAVSAPS SSTTLSQNTY WMVVLDKPPQ GVSSKSDIVD YYVEILAKVL
101: GNSEKDAQMS IYDASFDTHF GFCCHIDEEA SRQLARLPGV LSVRPEAGYS SGNKNYGIGN QTGVSLFDHG TVKHWMVRID KPGVGIVTKA QMVDHCVQLL
201: SKVLWNEKDA QMCLYHVSWK SKFGFCCDLD ETCAEELAGV PGVLAVVPDN KFESLNKDYE GDNSTQEDSR ESSESPPVKT KKLFITGLSF YTSEKTLRAA
301: FEGFGELVEV KIIMDKISKR SKGYAFIEYT TEEAASVALE EMNGKIINGW MIVVDVAKTK PFRHKRRETS SEL

Best Arabidopsis Sequence Match ( AT3G20930.1 )
(BLAST)

001: MEALIASTSF FVPISNSSSS HIINNRFFPS FYSPNLNFGT FRKTSLSSSH LVFSSSAISA PPSSTVLTRN SYWMVLLDKP PHWVSSKSAM VDYYVEILAK
101: VLGNEKDAQV SIYDASFDTH FGFCCHIDED ASRQLASLPG VVSIRPEQDY SSEKKNYGIG SHKGVSLFDH GTVKHWMVRI DKPGVGIVTK AQMVDHCVQL
201: LSKVLWNEKD AQMCLYHVSW QSDFGFCCDL DERSAVELAG VPGVLAVVPD NSFESLNKDY EGDSTQDSRD QDDSESPPVK TKKLFITGLS FYTSEKTLRA
301: AFEGFGELVE VKIIMDKISK RSKGYAFLEY TTEEAAGTAL KEMNGKIING WMIVVDVAKT KPFRQNRSQP SFGL

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPX6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.