Factsheet for Bra029692.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35978	Canola	mitochondrion, plastid	96.5	96.5
AT3G08000.1	Thale cress	plastid	81.12	81.12
OQU88096	Sorghum	cytosol, mitochondrion, nucleus	27.27	60.0
KXG32985	Sorghum	cytosol, mitochondrion, nucleus	26.57	56.72
VIT_12s0059g01210.t01	Wine grape	mitochondrion	54.55	55.71
PGSC0003DMT400001786	Potato	nucleus	27.27	55.71
KRH17905	Soybean	cytosol, mitochondrion, nucleus	32.17	55.42
GSMUA_Achr11P...	Banana	mitochondrion	50.35	54.55
Solyc07g049270.2.1	Tomato	mitochondrion	49.65	50.35
KRH50325	Soybean	vacuole	46.85	47.86
TraesCS3B01G454200.1	Wheat	mitochondrion	48.25	47.26
TraesCS3A01G418900.1	Wheat	mitochondrion	47.55	46.58
Os01t0916600-01	Rice	mitochondrion	38.46	36.67
Bra013997.1-P	Field mustard	mitochondrion	32.87	32.41
Zm00001d012052_P001	Maize	mitochondrion, plastid	34.27	31.41
Bra037056.1-P	Field mustard	mitochondrion	32.17	30.67
HORVU3Hr1G093400.1	Barley	plastid	35.66	30.36
TraesCS3D01G417800.1	Wheat	plastid	37.06	30.11
Bra020279.1-P	Field mustard	mitochondrion	22.38	29.09
Bra028739.1-P	Field mustard	mitochondrion	29.37	28.77
Bra002976.1-P	Field mustard	mitochondrion	20.28	27.88
Bra000516.1-P	Field mustard	mitochondrion	23.78	25.37
Bra005189.1-P	Field mustard	plastid	23.78	23.61
Bra025674.1-P	Field mustard	mitochondrion	23.78	23.45
Bra014000.1-P	Field mustard	mitochondrion	32.87	21.17
Bra029020.1-P	Field mustard	plastid	22.38	20.91
Bra030284.1-P	Field mustard	nucleus	24.48	20.83
Bra001972.1-P	Field mustard	nucleus	23.78	20.73
Bra008100.1-P	Field mustard	cytosol	11.89	20.73
Bra011869.1-P	Field mustard	cytosol	23.08	20.37
Bra031210.1-P	Field mustard	nucleus	23.78	20.24
Bra010693.1-P	Field mustard	nucleus	23.08	20.0
Bra035944.1-P	Field mustard	plastid	33.57	18.25
Bra008020.1-P	Field mustard	endoplasmic reticulum	25.17	17.31
Bra008142.1-P	Field mustard	mitochondrion	30.77	16.67
Bra015926.1-P	Field mustard	mitochondrion	31.47	15.79
Bra025205.1-P	Field mustard	nucleus	25.17	15.52
Bra012986.1-P	Field mustard	mitochondrion	32.87	15.41
Bra032933.1-P	Field mustard	nucleus	24.48	14.4
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	21.68	12.06
Bra031244.1-P	Field mustard	plastid	24.48	9.38
Bra005798.1-P	Field mustard	nucleus	18.88	8.82

Protein Annotations

EnsemblPlants:Bra029692.1	EnsemblPlants:Bra029692.1-P	EnsemblPlantsGene:Bra029692	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45040	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002547DEC	UniProt:M4ELM4	MapMan:35.1	:	:

Description

AT3G08000 (E=2e-055) | RNA-binding protein, putative

Coordinates

chrA05:+:22633577..22634339

Molecular Weight (calculated)

15742.0 Da

IEP (calculated)

10.595

GRAVY (calculated)

-0.264

Length

143 amino acids

Sequence
(BLAST)

001: MRYGIEMLVR RVIAIPQHSI PSSFHVLPHF CSSSSASPSS KLFIGGLSYS VDEQSLKEAF SSFGKVEEVR IAYDKGSGRS RGFGFVDFAE KDDALSAKHA
101: MDGKGLFGRP LRIGFALQKV RGGPVVVQRF GKPNSDREKK VFK

Best Arabidopsis Sequence Match ( AT3G08000.1 )
(BLAST)

001: MMKNGIELLV RRVSAIPQHS ISSSFHFLPQ FCTSSSASPS SKLFIGGLSW SVDEQSLKDA FSSFGEVAEV RIAYDKGSGR SRGFGFVDFA EEGDALSAKD
101: AMDGKGLLGR PLRISFALER VRGGPVVVPR LGKSKRERER VFK

Arabidopsis Description

At3g08000 [Source:UniProtKB/TrEMBL;Acc:Q9SFB4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.