Factsheet for Bra005189.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74955	Canola	plastid	97.92	97.24
CDX91368	Canola	plastid	97.22	96.55
VIT_08s0040g03330.t01	Wine grape	plastid	70.14	72.14
AT2G37510.2	Thale cress	mitochondrion, plastid	80.56	69.46
KRG95817	Soybean	mitochondrion	61.81	64.03
KRH67547	Soybean	mitochondrion	60.42	62.59
Solyc10g084630.1.1	Tomato	mitochondrion	59.03	61.59
PGSC0003DMT400028726	Potato	nucleus	55.56	54.79
EER92461	Sorghum	plastid	61.81	52.66
TraesCS4B01G204600.1	Wheat	plastid	62.5	52.63
Zm00001d028661_P001	Maize	plastid	60.42	52.41
TraesCS4A01G099700.1	Wheat	plastid	62.5	52.33
TraesCS4D01G205500.1	Wheat	plastid	62.5	52.33
Os03t0278800-00	Rice	plastid	61.11	50.87
GSMUA_Achr6P15340_001	Banana	plastid	59.72	48.86
Bra002976.1-P	Field mustard	mitochondrion	33.33	46.15
HORVU4Hr1G059000.4	Barley	plastid	61.81	46.11
Bra029020.1-P	Field mustard	plastid	41.67	39.22
Bra025674.1-P	Field mustard	mitochondrion	34.03	33.79
Bra020279.1-P	Field mustard	mitochondrion	25.69	33.64
Bra037056.1-P	Field mustard	mitochondrion	34.72	33.33
Bra013997.1-P	Field mustard	mitochondrion	33.33	33.1
Bra028739.1-P	Field mustard	mitochondrion	33.33	32.88
Bra008100.1-P	Field mustard	cytosol	17.36	30.49
Bra030284.1-P	Field mustard	nucleus	30.56	26.19
Bra031210.1-P	Field mustard	nucleus	28.47	24.4
Bra001972.1-P	Field mustard	nucleus	27.08	23.78
Bra029692.1-P	Field mustard	mitochondrion	23.61	23.78
Bra011869.1-P	Field mustard	cytosol	26.39	23.46
Bra010693.1-P	Field mustard	nucleus	26.39	23.03
Bra000516.1-P	Field mustard	mitochondrion	20.83	22.39
Bra014000.1-P	Field mustard	mitochondrion	33.33	21.62
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	31.25	17.51
Bra008020.1-P	Field mustard	endoplasmic reticulum	25.0	17.31
Bra008142.1-P	Field mustard	mitochondrion	29.86	16.29
Bra035944.1-P	Field mustard	plastid	28.47	15.59
Bra025205.1-P	Field mustard	nucleus	24.31	15.09
Bra032933.1-P	Field mustard	nucleus	25.0	14.81
Bra015926.1-P	Field mustard	mitochondrion	29.17	14.74
Bra012986.1-P	Field mustard	mitochondrion	28.47	13.44
Bra031244.1-P	Field mustard	plastid	28.47	10.99
Bra005798.1-P	Field mustard	nucleus	22.22	10.46

Protein Annotations

EnsemblPlants:Bra005189.1	EnsemblPlants:Bra005189.1-P	EnsemblPlantsGene:Bra005189	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45392	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002547999	UniProt:M4CLV2	MapMan:35.1	:	:

Description

AT2G37510 (E=5e-057) | RNA-binding protein, putative

Coordinates

chrA05:+:3904384..3905226

Molecular Weight (calculated)

15893.7 Da

IEP (calculated)

10.402

GRAVY (calculated)

-0.420

Length

144 amino acids

Sequence
(BLAST)

001: MAFVSTFRRI LAGSNNSLSS SSFSWARHCS TLSSPKLFVS GLSRLTTNEK LQDAFAPFGE LVDARVITDR ETGRSKGFGF VTYATIQDAE KAKEGMNAKF
101: LDGWVIFVDP ARPREPRRPL HQDHPQSSSS GSGFTTNKTI GWCK

Best Arabidopsis Sequence Match ( AT2G37510.1 )
(BLAST)

001: MAFVSSFRRL VAGSSSLLSS PSLCVRRCST LTSPRLFVSG LSRLTTNEKL QDAFASFGQL VDARVITDRD SGRSKGFGFV TYATIEDAEK AKAEMNAKFL
101: DGWVIFVDPA RPREPRRPLQ QEPLRPSSES GFTTNKTIGW CK

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT2G37510]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.