Factsheet for HORVU4Hr1G059000.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G205500.1	Wheat	plastid	85.49	95.93
TraesCS4B01G204600.1	Wheat	plastid	84.46	95.32
TraesCS4A01G099700.1	Wheat	plastid	84.46	94.77
Os03t0278800-00	Rice	plastid	72.02	80.35
EER92461	Sorghum	plastid	67.36	76.92
Zm00001d028661_P001	Maize	plastid	65.8	76.51
VIT_08s0040g03330.t01	Wine grape	plastid	51.3	70.71
KRG95817	Soybean	mitochondrion	48.19	66.91
KRH67547	Soybean	mitochondrion	47.15	65.47
GSMUA_Achr6P15340_001	Banana	plastid	56.48	61.93
Bra005189.1-P	Field mustard	plastid	46.11	61.81
CDX91368	Canola	plastid	46.11	61.38
CDX74955	Canola	plastid	45.6	60.69
Solyc10g084630.1.1	Tomato	mitochondrion	43.01	60.14
PGSC0003DMT400028726	Potato	nucleus	41.45	54.79
AT2G37510.2	Thale cress	mitochondrion, plastid	47.15	54.49
HORVU5Hr1G089190.1	Barley	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	18.13	35.35
HORVU2Hr1G073330.9	Barley	cytosol, nucleus	24.35	34.56
HORVU2Hr1G042560.2	Barley	mitochondrion	29.02	33.73
HORVU3Hr1G116710.1	Barley	mitochondrion	19.69	31.15
HORVU3Hr1G093400.1	Barley	plastid	23.83	27.38
HORVU6Hr1G055440.1	Barley	nucleus	20.21	24.07
HORVU5Hr1G002150.1	Barley	nucleus	20.21	22.54
HORVU7Hr1G078140.5	Barley	nucleus	19.17	16.09
HORVU5Hr1G110370.1	Barley	mitochondrion	23.83	15.7
HORVU3Hr1G094330.2	Barley	mitochondrion	22.8	14.38
HORVU5Hr1G118010.1	Barley	mitochondrion, nucleus	19.69	12.18

Protein Annotations

EnsemblPlants:HORVU4Hr1G059000.4	EnsemblPlantsGene:HORVU4Hr1G059000	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR45392	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI000B46B8C1	UniProt:A0A287P7X3	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrchr4H:+:492497631..492499305

Molecular Weight (calculated)

20800.6 Da

IEP (calculated)

10.108

GRAVY (calculated)

-0.350

Length

193 amino acids

Sequence
(BLAST)

001: MALSSSSTLL RRLLGSTSLS SSRSSVLRAA FCSSSSSSSA PSPTLPPPST IFGDDTEVAN VPPLTTPKLF VSGLSRLTTD EKLKSAFAPF GQLLEAKVIT
101: DRVSGRSKGF GFVRYVSLEE AETARQEMNA KFLDGWVIFV DPAKQREQKP APQPDTVSSH TGFTINKTVG WCDLKKTSHT REKPYPSPTT PTS

Best Arabidopsis Sequence Match ( AT2G37510.1 )
(BLAST)

001: MAFVSSFRRL VAGSSSLLSS PSLCVRRCST LTSPRLFVSG LSRLTTNEKL QDAFASFGQL VDARVITDRD SGRSKGFGFV TYATIEDAEK AKAEMNAKFL
101: DGWVIFVDPA RPREPRRPLQ QEPLRPSSES GFTTNKTIGW CK

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT2G37510]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.