Factsheet for HORVU3Hr1G093400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 4
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G422600.1	Wheat	nucleus	86.9	84.39
TraesCS3B01G457900.1	Wheat	plastid	85.12	81.71
TraesCS3D01G417800.1	Wheat	plastid	84.52	80.68
Os01t0916600-01	Rice	mitochondrion	63.69	71.33
Zm00001d012052_P001	Maize	mitochondrion, plastid	63.1	67.95
EES01954	Sorghum	plastid	57.74	65.99
HORVU6Hr1G055440.1	Barley	nucleus	40.48	41.98
PGSC0003DMT400001786	Potato	nucleus	16.67	40.0
HORVU5Hr1G089190.1	Barley	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	23.21	39.39
GSMUA_Achr11P...	Banana	mitochondrion	30.36	38.64
KRH50325	Soybean	vacuole	30.95	37.14
VIT_12s0059g01210.t01	Wine grape	mitochondrion	30.95	37.14
AT3G08000.1	Thale cress	plastid	31.55	37.06
Solyc07g049270.2.1	Tomato	mitochondrion	30.95	36.88
CDY28003	Canola	plastid	31.55	36.81
KRH17905	Soybean	cytosol, mitochondrion, nucleus	17.86	36.14
Bra029692.1-P	Field mustard	mitochondrion	30.36	35.66
CDY35978	Canola	mitochondrion, plastid	29.17	34.27
HORVU5Hr1G002150.1	Barley	nucleus	34.52	33.53
HORVU2Hr1G073330.9	Barley	cytosol, nucleus	26.19	32.35
HORVU5Hr1G110370.1	Barley	mitochondrion	55.95	32.08
HORVU2Hr1G042560.2	Barley	mitochondrion	28.57	28.92
HORVU3Hr1G116710.1	Barley	mitochondrion	20.83	28.69
HORVU3Hr1G094330.2	Barley	mitochondrion	48.81	26.8
HORVU7Hr1G078140.5	Barley	nucleus	33.93	24.78
HORVU4Hr1G059000.4	Barley	plastid	27.38	23.83
HORVU5Hr1G118010.1	Barley	mitochondrion, nucleus	34.52	18.59

Protein Annotations

EnsemblPlants:HORVU3Hr1G093400.1	EnsemblPlantsGene:HORVU3Hr1G093400	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44202	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0002950F82	UniProt:M0WJV7	MapMan:16.12.5.2	:	:	:

Description

No Description!

Coordinates

chrchr3H:-:641974381..641976553

Molecular Weight (calculated)

16571.0 Da

IEP (calculated)

8.464

GRAVY (calculated)

-0.345

Length

168 amino acids

Sequence
(BLAST)

001: MAALIKLGSL LRQSAFASSA STGSAPALFN AARFMCAGQS GPSSKLFVGG LAWGTDDHSL KEAFQSFGEV TEARVITDRE TGRSRGFGFV SFASEEDAGN
101: AAKGMDGQEL GGRNVRVNFA NERPSGGGGF RAGGGGGYGG GGGGYGGGGG YGGGGGRDYG GGGGRDSF

Best Arabidopsis Sequence Match ( AT3G23830.1 )
(BLAST)

001: MAFCNKLSGI LRQGVSQSSN GPVTSMLGSL RYMSSKLFVG GLSWGTDDSS LKQAFTSFGE VTEATVIADR ETGRSRGFGF VSFSCEDSAN NAIKEMDGKE
101: LNGRQIRVNL ATERSSAPRS SFGGGGGYGG GGGGGY

Arabidopsis Description

RBG4GRP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD35]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.