Factsheet for GSMUA_Achr11P11010_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU88096	Sorghum	cytosol, mitochondrion, nucleus	34.85	70.77
KXG32985	Sorghum	cytosol, mitochondrion, nucleus	34.09	67.16
PGSC0003DMT400001786	Potato	nucleus	34.09	64.29
KRH17905	Soybean	cytosol, mitochondrion, nucleus	36.36	57.83
TraesCS3A01G418900.1	Wheat	mitochondrion	63.64	57.53
VIT_12s0059g01210.t01	Wine grape	mitochondrion	60.61	57.14
TraesCS3B01G454200.1	Wheat	mitochondrion	62.88	56.85
Solyc07g049270.2.1	Tomato	mitochondrion	60.61	56.74
AT3G08000.1	Thale cress	plastid	58.33	53.85
KRH50325	Soybean	vacuole	55.3	52.14
CDY28003	Canola	plastid	56.06	51.39
Bra029692.1-P	Field mustard	mitochondrion	54.55	50.35
CDY35978	Canola	mitochondrion, plastid	54.55	50.35
Os01t0916600-01	Rice	mitochondrion	40.15	35.33
GSMUA_Achr7P02750_001	Banana	mitochondrion	37.88	33.33
Zm00001d012052_P001	Maize	mitochondrion, plastid	37.88	32.05
HORVU3Hr1G093400.1	Barley	plastid	38.64	30.36
TraesCS3D01G417800.1	Wheat	plastid	39.39	29.55
GSMUA_Achr6P35640_001	Banana	nucleus	31.06	29.5
GSMUA_Achr2P19090_001	Banana	mitochondrion	23.48	29.25
GSMUA_Achr4P16080_001	Banana	mitochondrion	40.91	28.42
GSMUA_Achr6P34250_001	Banana	mitochondrion	22.73	27.27
GSMUA_Achr7P27650_001	Banana	nucleus	25.76	25.56
GSMUA_Achr8P05200_001	Banana	cytosol	28.79	24.52
GSMUA_Achr11P...	Banana	mitochondrion	19.7	24.07
GSMUA_Achr4P14550_001	Banana	nucleus	27.27	22.78
GSMUA_Achr5P26410_001	Banana	cytosol, mitochondrion, nucleus	19.7	22.61
GSMUA_Achr6P15340_001	Banana	plastid	28.03	21.02
GSMUA_Achr8P07380_001	Banana	mitochondrion	21.21	20.74
GSMUA_Achr5P26170_001	Banana	nucleus, peroxisome, plasma membrane	25.76	20.24
GSMUA_Achr3P30570_001	Banana	plasma membrane	25.76	20.0
GSMUA_Achr5P15860_001	Banana	plastid	25.0	19.41
GSMUA_Achr9P07090_001	Banana	mitochondrion	34.09	18.91
GSMUA_Achr3P22540_001	Banana	nucleus, peroxisome, plasma membrane	25.76	16.59
GSMUA_Achr8P07840_001	Banana	mitochondrion, nucleus, plasma membrane	22.73	15.71
GSMUA_Achr4P03230_001	Banana	mitochondrion	30.3	15.62
GSMUA_Achr2P12550_001	Banana	nucleus	22.73	13.39
GSMUA_Achr2P01230_001	Banana	nucleus	25.76	10.9
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	27.27	10.43
GSMUA_Achr4P22370_001	Banana	nucleus	23.48	9.97

Protein Annotations

EnsemblPlants:GSMUA_Achr11P11010_001	EnsemblPlants:GSMUA_Achr11T11010_001	EnsemblPlantsGene:GSMUA_Achr11G11010_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR15241	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000294D07F	UniProt:M0RR81	MapMan:35.1	:	:

Description

Glycine-rich RNA-binding protein, putative [Source:GMGC_GENE;Acc:GSMUA_Achr11G11010_001]

Coordinates

chr11:-:8733284..8736172

Molecular Weight (calculated)

14472.5 Da

IEP (calculated)

10.891

GRAVY (calculated)

-0.242

Length

132 amino acids

Sequence
(BLAST)

001: MRHLVSRWRL ARPSSLPQPR FHCAPPPPPP PSNSKLFVGG LSWSVDEMSL KDAFSSFGDV TEVRIMYDKN TGRSRGFGFI HFASDDAAKC AKFAMDGKAF
101: LGRPLRISFA IDKVRGGPVV VPRLPAVGES TN

Best Arabidopsis Sequence Match ( AT3G08000.1 )
(BLAST)

001: MMKNGIELLV RRVSAIPQHS ISSSFHFLPQ FCTSSSASPS SKLFIGGLSW SVDEQSLKDA FSSFGEVAEV RIAYDKGSGR SRGFGFVDFA EEGDALSAKD
101: AMDGKGLLGR PLRISFALER VRGGPVVVPR LGKSKRERER VFK

Arabidopsis Description

At3g08000 [Source:UniProtKB/TrEMBL;Acc:Q9SFB4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.