Factsheet for GSMUA_Achr5P26410_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P05000_001
GSMUA_Achr2P15270_001
GSMUA_Achr6P16420_001
GSMUA_Achr8P00510_001
GSMUA_Achr9P19610_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54580.1	GSMUA_Achr10P...	AT2G33550.1	21798944
AT5G54580.1	GSMUA_Achr6P16420_001	AT2G33550.1	21798944
AT5G54580.1	GSMUA_Achr8P00510_001	AT2G33550.1	21798944
AT5G54580.1	GSMUA_Achr2P05000_001	AT3G21215.1	21798944
AT5G54580.1	GSMUA_Achr9P19610_001	AT3G21215.1	21798944
AT5G54580.1	GSMUA_Achr2P15270_001	AT5G53060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	mitochondrion	71.3	75.93
Bra002976.1-P	Field mustard	mitochondrion	56.52	62.5
VIT_19s0014g04770.t01	Wine grape	mitochondrion	65.22	55.56
GSMUA_Achr8P07380_001	Banana	mitochondrion	59.13	50.37
KRH25927	Soybean	mitochondrion, plastid	62.61	49.66
Zm00001d024675_P001	Maize	mitochondrion	58.26	47.86
KRH55574	Soybean	mitochondrion, plastid	60.0	47.59
Solyc07g063900.2.1	Tomato	plastid	61.74	47.02
Os08t0139000-02	Rice	mitochondrion	57.39	46.81
EES14515	Sorghum	plastid	56.52	46.43
PGSC0003DMT400049607	Potato	plastid	62.61	45.86
CDY64931	Canola	plastid	59.13	44.44
CDY42466	Canola	plastid	59.13	44.44
Bra029020.1-P	Field mustard	plastid	58.26	43.79
CDY43035	Canola	plastid	58.26	43.79
CDY43820	Canola	plastid	59.13	43.31
AT5G54580.1	Thale cress	mitochondrion, plastid	58.26	42.95
TraesCS7B01G207500.1	Wheat	mitochondrion	55.65	42.11
TraesCS7A01G307200.1	Wheat	plastid	53.91	40.52
GSMUA_Achr6P34250_001	Banana	mitochondrion	29.57	30.91
GSMUA_Achr6P15340_001	Banana	plastid	44.35	28.98
GSMUA_Achr6P35640_001	Banana	nucleus	33.04	27.34
GSMUA_Achr5P15860_001	Banana	plastid	36.52	24.71
GSMUA_Achr2P19090_001	Banana	mitochondrion	21.74	23.58
GSMUA_Achr7P02750_001	Banana	mitochondrion	30.43	23.33
GSMUA_Achr7P27650_001	Banana	nucleus	26.09	22.56
GSMUA_Achr4P16080_001	Banana	mitochondrion	34.78	21.05
GSMUA_Achr11P...	Banana	mitochondrion	22.61	19.7
GSMUA_Achr5P26170_001	Banana	nucleus, peroxisome, plasma membrane	28.7	19.64
GSMUA_Achr4P14550_001	Banana	nucleus	26.96	19.62
GSMUA_Achr8P05200_001	Banana	cytosol	26.09	19.35
GSMUA_Achr3P30570_001	Banana	plasma membrane	26.96	18.24
GSMUA_Achr8P07840_001	Banana	mitochondrion, nucleus, plasma membrane	28.7	17.28
GSMUA_Achr3P22540_001	Banana	nucleus, peroxisome, plasma membrane	28.7	16.1
GSMUA_Achr9P07090_001	Banana	mitochondrion	31.3	15.13
GSMUA_Achr2P12550_001	Banana	nucleus	26.96	13.84
GSMUA_Achr4P03230_001	Banana	mitochondrion	29.57	13.28
GSMUA_Achr4P22370_001	Banana	nucleus	28.7	10.61
GSMUA_Achr2P01230_001	Banana	nucleus	26.96	9.94
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	28.7	9.57

Protein Annotations

EnsemblPlants:GSMUA_Achr5P26410_001	EnsemblPlants:GSMUA_Achr5T26410_001	EnsemblPlantsGene:GSMUA_Achr5G26410_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45392	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI00029492AE	UniProt:M0T1W6	MapMan:16.12.5.2	:	:

Description

Putative 28 kDa ribonucleoprotein, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr5G26410_001]

Coordinates

chr5:-:27213450..27220165

Molecular Weight (calculated)

12809.2 Da

IEP (calculated)

7.502

GRAVY (calculated)

-0.509

Length

115 amino acids

Sequence
(BLAST)

001: MSCHPYYLSD CHPRILEATE ERLSKRTTSE GLMEAFSKFG QIIHARVVTD RVSGYSKGFG FVRYATLAEA AEGIKGMDGK FLDGWVIFAE YARPRPPPPG
101: QTPPPPPSEP PYGYQ

Best Arabidopsis Sequence Match ( AT5G54580.1 )
(BLAST)

001: MAMAMRLPAI SRAVTEVASA PVGLRRLFCS NASRFSFLSP QAESQTPARP QAEPSTNLFV SGLSKRTTSE GLRTAFAQFG EVADAKVVTD RVSGYSKGFG
101: FVRYATLEDS AKGIAGMDGK FLDGWVIFAE YARPREQSQS YQPQNNMSRP PYYGNR

Arabidopsis Description

ORRM2Organelle RRM domain-containing protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FIU6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.