Factsheet for GSMUA_Achr11P18650_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 7
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P05000_001
GSMUA_Achr2P15270_001
GSMUA_Achr6P16420_001
GSMUA_Achr8P00510_001
GSMUA_Achr9P19610_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54580.1	GSMUA_Achr10P...	AT2G33550.1	21798944
AT5G54580.1	GSMUA_Achr6P16420_001	AT2G33550.1	21798944
AT5G54580.1	GSMUA_Achr8P00510_001	AT2G33550.1	21798944
AT5G54580.1	GSMUA_Achr2P05000_001	AT3G21215.1	21798944
AT5G54580.1	GSMUA_Achr9P19610_001	AT3G21215.1	21798944
AT5G54580.1	GSMUA_Achr2P15270_001	AT5G53060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P26410_001	Banana	cytosol, mitochondrion, nucleus	75.93	71.3
Bra002976.1-P	Field mustard	mitochondrion	60.19	62.5
VIT_19s0014g04770.t01	Wine grape	mitochondrion	68.52	54.81
Solyc07g063900.2.1	Tomato	plastid	67.59	48.34
KRH25927	Soybean	mitochondrion, plastid	64.81	48.28
GSMUA_Achr8P07380_001	Banana	mitochondrion	60.19	48.15
Zm00001d024675_P001	Maize	mitochondrion	62.04	47.86
EES14515	Sorghum	plastid	62.04	47.86
PGSC0003DMT400049607	Potato	plastid	67.59	46.5
KRH55574	Soybean	mitochondrion, plastid	62.04	46.21
Os08t0139000-02	Rice	mitochondrion	60.19	46.1
TraesCS7B01G207500.1	Wheat	mitochondrion	60.19	42.76
Bra029020.1-P	Field mustard	plastid	60.19	42.48
CDY42466	Canola	plastid	60.19	42.48
CDY43035	Canola	plastid	60.19	42.48
TraesCS7A01G307200.1	Wheat	plastid	59.26	41.83
CDY64931	Canola	plastid	59.26	41.83
CDY43820	Canola	plastid	60.19	41.4
AT5G54580.1	Thale cress	mitochondrion, plastid	59.26	41.03
GSMUA_Achr6P34250_001	Banana	mitochondrion	30.56	30.0
GSMUA_Achr6P15340_001	Banana	plastid	45.37	27.84
GSMUA_Achr6P35640_001	Banana	nucleus	34.26	26.62
GSMUA_Achr2P19090_001	Banana	mitochondrion	24.07	24.53
GSMUA_Achr5P15860_001	Banana	plastid	37.96	24.12
GSMUA_Achr7P02750_001	Banana	mitochondrion	32.41	23.33
GSMUA_Achr7P27650_001	Banana	nucleus	25.93	21.05
GSMUA_Achr11P...	Banana	mitochondrion	24.07	19.7
GSMUA_Achr4P16080_001	Banana	mitochondrion	34.26	19.47
GSMUA_Achr5P26170_001	Banana	nucleus, peroxisome, plasma membrane	28.7	18.45
GSMUA_Achr4P14550_001	Banana	nucleus	26.85	18.35
GSMUA_Achr8P07840_001	Banana	mitochondrion, nucleus, plasma membrane	31.48	17.8
GSMUA_Achr8P05200_001	Banana	cytosol	25.0	17.42
GSMUA_Achr3P22540_001	Banana	nucleus, peroxisome, plasma membrane	31.48	16.59
GSMUA_Achr3P30570_001	Banana	plasma membrane	25.0	15.88
GSMUA_Achr9P07090_001	Banana	mitochondrion	34.26	15.55
GSMUA_Achr4P03230_001	Banana	mitochondrion	32.41	13.67
GSMUA_Achr2P12550_001	Banana	nucleus	26.85	12.95
GSMUA_Achr4P22370_001	Banana	nucleus	27.78	9.65
GSMUA_Achr2P01230_001	Banana	nucleus	27.78	9.62
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	27.78	8.7

Protein Annotations

EnsemblPlants:GSMUA_Achr11P18650_001	EnsemblPlants:GSMUA_Achr11T18650_001	EnsemblPlantsGene:GSMUA_Achr11G18650_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45392	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000294F216	UniProt:M0RTE5	MapMan:16.12.5.2	:	:

Description

Putative Ribonucleoprotein At2g37220, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr11G18650_001]

Coordinates

chr11:-:20003112..20006665

Molecular Weight (calculated)

11893.2 Da

IEP (calculated)

10.280

GRAVY (calculated)

-0.535

Length

108 amino acids

Sequence
(BLAST)

001: MRRTTMRGLN KRTTSEGLWE AFSKFGQVVH ARVVTDRVSG YSKGFGFVRY ATLEEAEAGI KGMDGKFLDG WVIFAEYARP RPPPPGQTQL QTAAAPPPQA
101: MEPPAGHQ

Best Arabidopsis Sequence Match ( AT5G54580.1 )
(BLAST)

001: MAMAMRLPAI SRAVTEVASA PVGLRRLFCS NASRFSFLSP QAESQTPARP QAEPSTNLFV SGLSKRTTSE GLRTAFAQFG EVADAKVVTD RVSGYSKGFG
101: FVRYATLEDS AKGIAGMDGK FLDGWVIFAE YARPREQSQS YQPQNNMSRP PYYGNR

Arabidopsis Description

ORRM2Organelle RRM domain-containing protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FIU6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.