Factsheet for GSMUA_Achr6P35640_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P25160_001
GSMUA_Achr4P08560_001
GSMUA_Achr7P24480_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27330.1	GSMUA_Achr10P...	AT2G42580.1	19000166
AT2G27330.1	GSMUA_Achr3P25160_001	AT2G42580.1	19000166
AT2G27330.1	GSMUA_Achr4P08560_001	AT2G42580.1	19000166
AT2G27330.1	GSMUA_Achr7P24480_001	AT2G42580.1	19000166
AT2G27330.1	GSMUA_AchrUn_...	AT2G42580.1	19000166
AT2G27330.1	GSMUA_AchrUn_...	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0080g00870.t01	Wine grape	plastid	41.01	51.35
TraesCS2D01G294000.1	Wheat	mitochondrion	48.2	48.2
TraesCS2B01G312500.1	Wheat	mitochondrion	48.2	48.2
TraesCS2A01G296100.1	Wheat	mitochondrion	48.2	48.2
EES10764	Sorghum	mitochondrion	46.04	47.41
Os04t0414300-00	Rice	mitochondrion	46.04	46.72
HORVU2Hr1G073330.9	Barley	cytosol, nucleus	41.73	42.65
KRH27720	Soybean	endoplasmic reticulum, mitochondrion	28.78	41.24
KRH77758	Soybean	mitochondrion	32.37	39.82
AT2G27330.1	Thale cress	mitochondrion	30.94	37.07
GSMUA_Achr2P19090_001	Banana	mitochondrion	27.34	35.85
GSMUA_Achr6P34250_001	Banana	mitochondrion	28.06	35.45
GSMUA_Achr11P...	Banana	mitochondrion	26.62	34.26
GSMUA_Achr5P26410_001	Banana	cytosol, mitochondrion, nucleus	27.34	33.04
GSMUA_Achr8P07380_001	Banana	mitochondrion	30.22	31.11
GSMUA_Achr11P...	Banana	mitochondrion	29.5	31.06
CDY31170	Canola	mitochondrion, nucleus	29.5	31.06
Bra000516.1-P	Field mustard	mitochondrion	29.5	30.6
CDX83260	Canola	mitochondrion	29.5	30.6
GSMUA_Achr7P02750_001	Banana	mitochondrion	32.37	30.0
GSMUA_Achr6P15340_001	Banana	plastid	36.69	28.98
GSMUA_Achr7P27650_001	Banana	nucleus	25.9	27.07
GSMUA_Achr5P15860_001	Banana	plastid	30.94	25.29
GSMUA_Achr4P16080_001	Banana	mitochondrion	33.81	24.74
GSMUA_Achr8P05200_001	Banana	cytosol	27.34	24.52
GSMUA_Achr4P14550_001	Banana	nucleus	25.18	22.15
GSMUA_Achr5P26170_001	Banana	nucleus, peroxisome, plasma membrane	26.62	22.02
GSMUA_Achr3P30570_001	Banana	plasma membrane	26.62	21.76
GSMUA_Achr9P07090_001	Banana	mitochondrion	33.81	19.75
GSMUA_Achr8P07840_001	Banana	mitochondrion, nucleus, plasma membrane	25.18	18.32
GSMUA_Achr3P22540_001	Banana	nucleus, peroxisome, plasma membrane	25.18	17.07
GSMUA_Achr4P03230_001	Banana	mitochondrion	30.22	16.41
GSMUA_Achr2P01230_001	Banana	nucleus	33.81	15.06
GSMUA_Achr2P12550_001	Banana	nucleus	23.74	14.73
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	28.78	11.59
GSMUA_Achr4P22370_001	Banana	nucleus	25.9	11.58

Protein Annotations

EnsemblPlants:GSMUA_Achr6P35640_001	EnsemblPlants:GSMUA_Achr6T35640_001	EnsemblPlantsGene:GSMUA_Achr6G35640_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45502	PANTHER:PTHR45502:SF1	PFAM:PF00076	PFscan:PS50102	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000296B400	UniProt:M0TD07	MapMan:35.1	:	:

Description

Putative Glycine-rich RNA-binding protein 2, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr6G35640_001]

Coordinates

chr6:-:33786419..33789620

Molecular Weight (calculated)

15359.5 Da

IEP (calculated)

9.426

GRAVY (calculated)

-0.209

Length

139 amino acids

Sequence
(BLAST)

001: MQFIRSTARF KDHHIHGNSN LDNCGLLRPF QLVSARGIVS KLFVGGLSSS TTEDCLSEAF SQFGQVIEAK IIMDKVSKRS KGFGFVTFAS EEEAQKALEE
101: MDRKVLNGRV VFIEHAKVKR RFDDAGPIAI GLSKPPGCQ

Best Arabidopsis Sequence Match ( AT5G06210.1 )
(BLAST)

001: MAALARIGGR HLKSVCLINS SASCFFTQRR GVASKLFIGG LSFCTTEQGL SEAFSKCGQV VEAQIVMDRV SDRSKGFGFV TFASADEAQK ALMEFNGQQL
101: NGRTIFVDYA KAKQSLGGGG GYPIARGPPD PAVIAATRTT ETSKSD

Arabidopsis Description

S-RBP11Small RNA-binding protein 11, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FFZ6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.