Factsheet for TraesCS2D01G294000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27330.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT2G27330.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT2G27330.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT2G27330.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT2G27330.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT2G27330.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT2G27330.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT2G27330.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT2G27330.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G312500.1	Wheat	mitochondrion	94.96	94.96
TraesCS2A01G296100.1	Wheat	mitochondrion	94.96	94.96
Os04t0414300-00	Rice	mitochondrion	76.26	77.37
EES10764	Sorghum	mitochondrion	74.1	76.3
HORVU2Hr1G073330.9	Barley	cytosol, nucleus	71.22	72.79
VIT_08s0007g02860.t01	Wine grape	mitochondrion	52.52	54.89
PGSC0003DMT400072597	Potato	mitochondrion	50.36	54.26
Solyc10g083240.1.1	Tomato	mitochondrion	49.64	53.49
KRH67959	Soybean	mitochondrion	49.64	53.08
GSMUA_Achr6P35640_001	Banana	nucleus	48.2	48.2
CDY04982	Canola	mitochondrion	49.64	47.26
Bra028739.1-P	Field mustard	mitochondrion	49.64	47.26
AT5G06210.1	Thale cress	mitochondrion	49.64	47.26
CDY14089	Canola	mitochondrion	48.2	45.89
KRH27720	Soybean	endoplasmic reticulum, mitochondrion	30.94	44.33
KRH77758	Soybean	mitochondrion	35.25	43.36
VIT_06s0080g00870.t01	Wine grape	plastid	34.53	43.24
AT2G27330.1	Thale cress	mitochondrion	32.37	38.79
TraesCS4D01G205200.1	Wheat	mitochondrion	27.34	36.54
CDY31170	Canola	mitochondrion, nucleus	30.94	32.58
TraesCS3D01G539400.1	Wheat	mitochondrion	25.18	32.11
CDX83260	Canola	mitochondrion	30.22	31.34
Bra000516.1-P	Field mustard	mitochondrion	30.22	31.34
TraesCS2D01G217900.1	Wheat	mitochondrion	30.22	30.0
TraesCS4D01G205500.1	Wheat	plastid	35.97	29.07
TraesCS3D01G417800.1	Wheat	plastid	35.97	28.41
TraesCS6D01G199100.1	Wheat	nucleus	26.62	23.87
TraesCS4D01G018500.1	Wheat	nucleus	28.06	23.49
TraesCS5D01G020900.1	Wheat	plastid	28.78	22.99
TraesCS3D01G424100.1	Wheat	mitochondrion	30.94	19.63
TraesCS5D01G516500.1	Wheat	nucleus	28.06	17.57
TraesCS7D01G323600.1	Wheat	nucleus	25.9	15.65
TraesCS2D01G184200.1	Wheat	mitochondrion	35.25	15.08
TraesCS5D01G473100.1	Wheat	mitochondrion	31.65	14.38
TraesCS2D01G238900.1	Wheat	nucleus	25.9	12.29
TraesCS4D01G023800.2	Wheat	nucleus	23.74	10.38
TraesCS6D01G273200.1	Wheat	plastid	28.78	10.26

Protein Annotations

EnsemblPlants:TraesCS2D01G294000.1	EnsemblPlantsGene:TraesCS2D01G294000	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR45502
PANTHER:PTHR45502:SF1	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:376353315..376355054

Molecular Weight (calculated)

14996.1 Da

IEP (calculated)

10.579

GRAVY (calculated)

-0.173

Length

139 amino acids

Sequence
(BLAST)

001: MAMAALREAS RRLASISTWS PAGAATRPLL LTHSRGITHK LFIGGLSQFA TEDSLAEAFM RYGQVLEATI VTDKMTSRSK GFGFVKFASE EEASKAREEM
101: NGKVLNGRVI YVDIAKAKQD RAADVVPIAR GPPKPVGNT

Best Arabidopsis Sequence Match ( AT5G06210.1 )
(BLAST)

001: MAALARIGGR HLKSVCLINS SASCFFTQRR GVASKLFIGG LSFCTTEQGL SEAFSKCGQV VEAQIVMDRV SDRSKGFGFV TFASADEAQK ALMEFNGQQL
101: NGRTIFVDYA KAKQSLGGGG GYPIARGPPD PAVIAATRTT ETSKSD

Arabidopsis Description

S-RBP11Small RNA-binding protein 11, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FFZ6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.