Factsheet for TraesCS3D01G424100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G428400.1	Wheat	mitochondrion	96.8	93.81
TraesCS3B01G465800.1	Wheat	mitochondrion	92.24	87.45
HORVU3Hr1G094330.2	Barley	mitochondrion	92.24	66.01
Os12t0502200-01	Rice	mitochondrion	70.32	59.69
EES16016	Sorghum	mitochondrion	65.3	57.2
Zm00001d041750_P001	Maize	mitochondrion	65.75	55.17
Zm00001d023734_P003	Maize	nucleus, plastid	66.21	50.52
GSMUA_Achr9P07090_001	Banana	mitochondrion	52.51	48.32
TraesCS3D01G417800.1	Wheat	plastid	34.7	43.18
GSMUA_Achr4P03230_001	Banana	mitochondrion	49.32	42.19
TraesCS4D01G018500.1	Wheat	nucleus	31.05	40.96
KRH45033	Soybean	nucleus, plastid	45.66	40.82
TraesCS6D01G199100.1	Wheat	nucleus	28.77	40.65
PGSC0003DMT400064758	Potato	mitochondrion	46.58	40.64
KRH01278	Soybean	mitochondrion, nucleus, plastid	45.21	40.57
Solyc02g066930.2.1	Tomato	nucleus	39.27	39.81
VIT_17s0000g07330.t01	Wine grape	plastid	50.23	39.71
TraesCS5D01G020900.1	Wheat	plastid	31.05	39.08
KRH56813	Soybean	mitochondrion	48.86	39.05
KRH03133	Soybean	nucleus	48.86	38.91
Bra035944.1-P	Field mustard	plastid	46.12	38.4
CDY16825	Canola	plastid	45.66	38.02
Bra012986.1-P	Field mustard	mitochondrion	50.68	36.39
TraesCS5D01G473100.1	Wheat	mitochondrion	49.77	35.62
AT5G61030.1	Thale cress	mitochondrion	50.23	35.6
TraesCS4D01G205200.1	Wheat	mitochondrion	16.44	34.62
TraesCS2D01G184200.1	Wheat	mitochondrion	48.86	32.92
CDY02175	Canola	mitochondrion	49.77	32.15
TraesCS2D01G217900.1	Wheat	mitochondrion	20.09	31.43
CDX87197	Canola	plastid	47.03	31.31
TraesCS3D01G539400.1	Wheat	mitochondrion	15.53	31.19
TraesCS2D01G294000.1	Wheat	mitochondrion	19.63	30.94
PGSC0003DMT400003685	Potato	nucleus	42.47	30.69
Solyc02g088790.2.1	Tomato	extracellular, plastid	49.77	29.22
TraesCS4D01G205500.1	Wheat	plastid	20.09	25.58
TraesCS5D01G516500.1	Wheat	nucleus	23.74	23.42
TraesCS7D01G323600.1	Wheat	nucleus	23.29	22.17
TraesCS2D01G238900.1	Wheat	nucleus	26.03	19.45
TraesCS4D01G023800.2	Wheat	nucleus	26.48	18.24
KRH54698	Soybean	plastid	44.75	14.54
TraesCS6D01G273200.1	Wheat	plastid	18.72	10.51

Protein Annotations

EnsemblPlants:TraesCS3D01G424100.1	EnsemblPlantsGene:TraesCS3D01G424100	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR45040
PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928	MapMan:16.12.5.2

Description

No Description!

Coordinates

chr3D:-:536245752..536247201

Molecular Weight (calculated)

22064.2 Da

IEP (calculated)

5.004

GRAVY (calculated)

-0.442

Length

219 amino acids

Sequence
(BLAST)

001: MALVNKLGNL LKKATSSNPT LYQAIRCMSS SKLFVGGLSF NTDEGSLRDA FSHYGEIIDA KIIVDRDTGR SRGFGFITYA AEEQASSAIM ALDGKDLHGR
101: NLRVSAATER TAGFRNGAGY GGGGGGFGGG GYGGGGYGGG GYGSNSGGGG DNFAAGNFGG ASGFGGNPAG NHGAPAGSTG GDEFSLGTPG STFESTKNDD
201: VMDDLFKDDE PDKYASKNV

Best Arabidopsis Sequence Match ( AT5G61030.2 )
(BLAST)

001: MAFLSKFGNI LKQTTNKQLN AQVSLSSPSL FQAIRCMSSS KLFIGGMAYS MDEDSLREAF TKYGEVVDTR VILDRETGRS RGFGFVTFTS SEAASSAIQA
101: LDGRDLHGRV VKVNYANDRT SGGGFGGGGY GGGGGGYGGS GGYGGGAGGY GGSGGYGGGA GGYGGNSGGG YGGNAAGGYG GSGAGGYGGD ATGHGGAGGG
201: YGSSGGFGSS GNTYGEGSSA SAGAVGDYNG SSGYGSANTY GSSNGGFAGD SQFGGSPVGN SSQFGGDNTQ FTAGGQFGGE DQFGSMEKSE TKMEDGPIGG
301: EFEDVAKRA

Arabidopsis Description

RBG3GR-RBP3 [Source:UniProtKB/TrEMBL;Acc:A0A178UBT5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.